Browse Element(s) Details


Os.10321.1.S1_at

Description gb:AK065944.1
DB_XREF= gi:32975962
TID=Os.10321.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047G08, full insert sequence.
FL= gb:AK065944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0663411/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06560Os.53771.1.A2_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06560Os.53771.1.A1_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06570Os.50216.1.S1_at11/119+3125678..3126160expressed protein
LOC_Os09g06580OsAffx.24386.2.S1_at11/119+3128207..3129193expressed protein
LOC_Os09g06590OsAffx.29734.1.S1_at11/119+3130087..3131619hypothetical protein
LOC_Os09g06600NANA9+3132719..3135097retrotransposon protein, putative, unclassified
LOC_Os09g06610NANA9+3135411..3136990retrotransposon protein, putative, unclassified
LOC_Os09g06620OsAffx.17579.1.S1_at11/119+3138079..3139353F-box domain containing protein, expressed
LOC_Os09g06634Os.10321.1.S1_at11/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06634OsAffx.27865.1.S1_x_at2/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06650Os.56292.1.S1_x_at2/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650Os.56292.1.S1_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650OsAffx.30013.5.S1_x_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650OsAffx.15648.1.S1_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06660OsAffx.6187.1.S1_at11/119+3162690..3163915hypothetical protein
LOC_Os09g06670OsAffx.29735.1.S1_at11/119+3165948..3166453hypothetical protein
LOC_Os09g06680OsAffx.17580.1.S1_at11/119+3167156..3170995Cell division cycle protein 20 homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10321.1.S1_at--853--6271Chr09:3145450..3145474 (25 bp)
GATGATAACCCATGTTTTTCTGATG
LOC_Os09g06634
Os.10321.1.S1_at--978--9071Chr09:3145491..3145515 (25 bp)
TGCTATTCGTGCTCGTTCAGTCCAT
LOC_Os09g06634
Os.10321.1.S1_at--334--6751Chr09:3145505..3145529 (25 bp)
GTTCAGTCCATACCCAGCTGAAAAA
LOC_Os09g06634
Os.10321.1.S1_at--196--4851Chr09:3145551..3145575 (25 bp)
GAATCGGTTTGGAAATAGGCAGTCA
LOC_Os09g06634
Os.10321.1.S1_at--190--6291Chr09:3145672..3145696 (25 bp)
GATGTTCTCTTGTCCAATTCATGGT
LOC_Os09g06634
Os.10321.1.S1_at--868--8971Chr09:3145699..3146130 (25 bp)
TGAACTTCTTACAGCAAATGATGGT
LOC_Os09g06634
Os.10321.1.S1_at--675--6251Chr09:3146125..3146149 (25 bp)
GATGGTAGTTCAGGCAATGGTCATA
LOC_Os09g06634
Os.10321.1.S1_at--33--3731Chr09:3146298..3146322 (25 bp)
CTCTATTACCTTGTCGGTTATTTAG
LOC_Os09g06634
Os.10321.1.S1_at--263--10211Chr09:3146316..3146340 (25 bp)
TATTTAGACATGCACTACCCTATCC
LOC_Os09g06634
Os.10321.1.S1_at--745--9931Chr09:3146331..3146355 (25 bp)
TACCCTATCCTTTTGTTTAGACCTG
LOC_Os09g06634
Os.10321.1.S1_at--1036--7651Chr09:3146355..3146379 (25 bp)
GGGATGATCCATTAATCTACTTGCT
LOC_Os09g06634
Target Sequence 
GATGATAACCCATGTTTTTCTGATGTGCTACGTAGGAGATCTGCTATTCGTGCTCGTTCAGTCCATACCCAGCTGAAAAA
TGATTTAATTGAGCATATTTGGAATCGGTTTGGAAATAGGCAGTCAACATAAACANGGAAGATGTTCTCTTGTCCAATTC
ATGGTGCTGAACTTCTTACAGCAAATGATGGTAGTTCAGGCAATGGTCATATGATGCAATGGTTCAATGAAGAGTCNCTC
TTTGATTAGATGAAGAAATCGTTATCTATCTGTTAGATAACATATTTATGTATTTTGCTTAATGTCACATTGTTTGTGAC
TTTTGGATTTGTAAACCATTAAGTATGTTTTGTTTTATCCTCTATTACCTTGTCGGTTATTTAGACATGCACTACCCTAT
CCTTTTGTTTAGACCTGGGATGATCCATTAATCTACTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis