Browse Element(s) Details


OsAffx.17580.1.S1_at

Description tigr:9637.m00423
TID=OsAffx.17580.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL035678 WD-repeat protein-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0668011/11Cell division cycle protein 20 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06634Os.10321.1.S1_at11/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06634OsAffx.27865.1.S1_x_at2/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06650Os.56292.1.S1_x_at2/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650Os.56292.1.S1_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650OsAffx.30013.5.S1_x_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650OsAffx.15648.1.S1_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06660OsAffx.6187.1.S1_at11/119+3162690..3163915hypothetical protein
LOC_Os09g06670OsAffx.29735.1.S1_at11/119+3165948..3166453hypothetical protein
LOC_Os09g06680OsAffx.17580.1.S1_at11/119+3167156..3170995Cell division cycle protein 20 homolog, putative, expressed
LOC_Os09g06690OsAffx.17581.1.S1_at11/119+3179559..3179768hypothetical protein
LOC_Os09g06700Os.45976.1.S1_x_at2/119+3184500..3186738transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g06710Os.46306.1.S1_x_at1/119+3189766..3192946transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17580.1.S1_at--131--2971Chr09:3169620..3169644 (25 bp)
AATGGCATCTTCTAATCTATCTCTA
LOC_Os09g06680
OsAffx.17580.1.S1_at--685--411Chr09:3169638..3169662 (25 bp)
ATCTCTAGGTCATAACCGGTGGCTT
LOC_Os09g06680
OsAffx.17580.1.S1_at--1077--4191Chr09:3169653..3169677 (25 bp)
CCGGTGGCTTCATAGATTTGGCGAT
LOC_Os09g06680
OsAffx.17580.1.S1_at--528--10231Chr09:3169669..3169693 (25 bp)
TTTGGCGATCATTTAGCTGCAGTGA
LOC_Os09g06680
OsAffx.17580.1.S1_at--565--8991Chr09:3169691..3169715 (25 bp)
TGAAGGCCCTTGCATGGTGTCCGTT
LOC_Os09g06680
OsAffx.17580.1.S1_at--802--7451Chr09:3169707..3169731 (25 bp)
GTGTCCGTTCCAGAGCAATTTGCTT
LOC_Os09g06680
OsAffx.17580.1.S1_at--1078--6391Chr09:3169753..3169777 (25 bp)
GATCGGTGCATCAGGTTTTGGAATA
LOC_Os09g06680
OsAffx.17580.1.S1_at--489--8571Chr09:3169812..3169899 (25 bp)
TGGATCACAGAATTCACTTGCATTG
LOC_Os09g06680
OsAffx.17580.1.S1_at--534--10751Chr09:3169934..3169958 (25 bp)
TTGAAGACCACACTGCTCGTGTTCT
LOC_Os09g06680
OsAffx.17580.1.S1_at--665--9851Chr09:3170074..3170098 (25 bp)
TACAGTAGCCTCTGTTGCAGCAGAT
LOC_Os09g06680
OsAffx.17580.1.S1_at--326--5351Chr09:3170135..3170159 (25 bp)
GAAGATGCCAAACCCGTATTCAAGA
LOC_Os09g06680
Target Sequence 
AATGGCATCTTCTAATCTATCTCTAGGTCATAACCGGTGGCTTCATAGATTTGGCGATCATTTAGCTGCAGTGAAGGCCC
TTGCATGGTGTCCGTTCCAGAGCAATTTGCTTGCATCTGGTGGTGGTGGAGATGATCGGTGCATCAGGTTTTGGAATACA
CACACTGGTTTATGTTTGAATTCTGTTGATACTGGATCACAGAATTCACTTGCATTGTGGAAATACCCTTCAATGGTTAA
ATTGGCAGAACTTGAAGACCACACTGCTCGTGTTCTTTGCCTGGCTCAGAGCCCTGATGGATTTACAGTAGCCTCTGTTG
CAGCAGATGAGACTCTAAGGTTATGGAAAATTTTTGAAACTTCTGAAGATGCCAAACCCGTATTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis