Browse Element(s) Details


OsAffx.6187.1.S1_at

Description tigr:9637.m00421
TID=OsAffx.6187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0666011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06620OsAffx.17579.1.S1_at11/119+3138079..3139353F-box domain containing protein, expressed
LOC_Os09g06634Os.10321.1.S1_at11/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06634OsAffx.27865.1.S1_x_at2/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06650Os.56292.1.S1_x_at2/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650Os.56292.1.S1_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650OsAffx.30013.5.S1_x_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650OsAffx.15648.1.S1_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06660OsAffx.6187.1.S1_at11/119+3162690..3163915hypothetical protein
LOC_Os09g06670OsAffx.29735.1.S1_at11/119+3165948..3166453hypothetical protein
LOC_Os09g06680OsAffx.17580.1.S1_at11/119+3167156..3170995Cell division cycle protein 20 homolog, putative, expressed
LOC_Os09g06690OsAffx.17581.1.S1_at11/119+3179559..3179768hypothetical protein
LOC_Os09g06700Os.45976.1.S1_x_at2/119+3184500..3186738transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6187.1.S1_at--862--10571Chr09:3163296..3163320 (25 bp)
TTCTCCTCCAGCACCGGTAAATGGG
LOC_Os09g06660
OsAffx.6187.1.S1_at--1010--7791Chr09:3163311..3163335 (25 bp)
GGTAAATGGGCCTTGTTCGACCACA
LOC_Os09g06660
OsAffx.6187.1.S1_at--955--5831Chr09:3163329..3163353 (25 bp)
GACCACACGGCAGACCTGTACGAAT
LOC_Os09g06660
OsAffx.6187.1.S1_at--580--8751Chr09:3163345..3163369 (25 bp)
TGTACGAATTCACCCGCAGCGACGG
LOC_Os09g06660
OsAffx.6187.1.S1_at--800--3371Chr09:3163463..3163487 (25 bp)
CACCATGGAGTGGACGGTCACCGTG
LOC_Os09g06660
OsAffx.6187.1.S1_at--160--6931Chr09:3163505..3163529 (25 bp)
GTAGTCGTACTGCATCGCCGACTTG
LOC_Os09g06660
OsAffx.6187.1.S1_at--851--2971Chr09:3163605..3163629 (25 bp)
AATGGTGGATGGAGATCTCGCTGTT
LOC_Os09g06660
OsAffx.6187.1.S1_at--754--3791Chr09:3163621..3163645 (25 bp)
CTCGCTGTTGGATCAGTTCGGGTAC
LOC_Os09g06660
OsAffx.6187.1.S1_at--858--9631Chr09:3163734..3163758 (25 bp)
TCAGGAAGCCCAATTCCTATCTTCT
LOC_Os09g06660
OsAffx.6187.1.S1_at--1033--5491Chr09:3163771..3163795 (25 bp)
GAACACCATGAAGCTGGACATCATT
LOC_Os09g06660
OsAffx.6187.1.S1_at--587--2591Chr09:3163799..3163823 (25 bp)
AACGATGCGGACGAGCCTTTCAGGG
LOC_Os09g06660
Target Sequence 
TTCTCCTCCAGCACCGGTAAATGGGCCTTGTTCGACCACACGGCAGACCTGTACGAATTCACCCGCAGCGACGGCATGCC
CGCCGGCCGGTTCGTGTACTGGCGGTCCAACAACAAGAAGTGCAGCCACCATGGAGTGGACGGTCACCGTGGCGCCGTTT
CCGGTGGGGTAGTCGTACTGCATCGCCGACTTGGCGGAGCACGGCCGGCTGTGCCTCGTGTCCAGCAAGGAACAAAACCT
TCAGCTCTGGGTCCGCAGCGGCAGCAGCAATGGTGGATGGAGATCTCGCTGTTGGATCAGTTCGGGTACTTGAAGAAGCT
GCGGCGTGAGGAGTGGATGAAGAGGGTGCGTGTCCTGGCAGCAAAGGCTGGTTATGTCTACATGGAGTTCTGGTCCATCA
GGAAGCCCAATTCCTATCTTCTCGTCCTCAACCTGAACACCATGAAGCTGGACATCATTTGCAACGATGCGGACGAGCCT
TTCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis