Browse Element(s) Details


OsAffx.29735.1.S1_at

Description tigr:9637.m00422
TID=OsAffx.29735.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0667011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06634Os.10321.1.S1_at11/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06634OsAffx.27865.1.S1_x_at2/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06650Os.56292.1.S1_x_at2/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650Os.56292.1.S1_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650OsAffx.30013.5.S1_x_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650OsAffx.15648.1.S1_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06660OsAffx.6187.1.S1_at11/119+3162690..3163915hypothetical protein
LOC_Os09g06670OsAffx.29735.1.S1_at11/119+3165948..3166453hypothetical protein
LOC_Os09g06680OsAffx.17580.1.S1_at11/119+3167156..3170995Cell division cycle protein 20 homolog, putative, expressed
LOC_Os09g06690OsAffx.17581.1.S1_at11/119+3179559..3179768hypothetical protein
LOC_Os09g06700Os.45976.1.S1_x_at2/119+3184500..3186738transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g06710Os.46306.1.S1_x_at1/119+3189766..3192946transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29735.1.S1_at--300--671Chr09:3166398..3166422 (25 bp)
ATGACTTCGGCCCAATCGTCAATGC
LOC_Os09g06670
OsAffx.29735.1.S1_at--383--4391Chr09:3166387..3166411 (25 bp)
CCAATCGTCAATGCCTCTAGTCAGA
LOC_Os09g06670
OsAffx.29735.1.S1_at--727--591Chr09:3166377..3166401 (25 bp)
ATGCCTCTAGTCAGAGACAAGGAAC
LOC_Os09g06670
OsAffx.29735.1.S1_at--676--951Chr09:3166338..3166362 (25 bp)
AGGACAGGGATGTGGTGCCGACGGC
LOC_Os09g06670
OsAffx.29735.1.S1_at--346--10031Chr09:3166304..3166328 (25 bp)
TAGATCCGGCGTTGGTGTCGAGATC
LOC_Os09g06670
OsAffx.29735.1.S1_at--627--551Chr09:3166301..3166325 (25 bp)
ATCCGGCGTTGGTGTCGAGATCGAC
LOC_Os09g06670
OsAffx.29735.1.S1_at--465--9371Chr09:3166036..3166305 (25 bp)
TCGACGGGGCGGTGATGATTCCAAC
LOC_Os09g06670
OsAffx.29735.1.S1_at--21--8831Chr09:3166021..3166044 (24 bp)
TGATTCCAACTCTGGCGGTCGTCGA
LOC_Os09g06670
OsAffx.29735.1.S1_at--771--3251Chr09:3166015..3166039 (25 bp)
CAACTCTGGCGGTCGTCGAGAAGGA
LOC_Os09g06670
OsAffx.29735.1.S1_at--48--5971Chr09:3165998..3166022 (25 bp)
GAGAAGGAGCACGTTGGCAACCCTC
LOC_Os09g06670
OsAffx.29735.1.S1_at--16--8511Chr09:3165984..3166008 (25 bp)
TGGCAACCCTCCAGACCACAGGGAG
LOC_Os09g06670
Target Sequence 
ATGACTTCGGCCCAATCGTCAATGCCTCTAGTCAGAGACAAGGAACCAAAGGCGGAGAAGAGGACAGGGATGTGGTGCCG
ACGGCGTGGTGGCGTAGATCCGGCGTTGGTGTCGAGATCGACGGGGCGGTGATGATTCCAACTCTGGCGGTCGTCGAGAA
GGAGCACGTTGGCAACCCTCCAGACCACAGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis