Browse Element(s) Details


Os.53771.1.A1_at

Description gb:AK099930.1
DB_XREF= gi:32985139
TID=Os.53771.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118L18, full insert sequence.
FL= gb:AK099930.1 gb:AK109602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0656011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06520OsAffx.17577.1.S1_at11/119+3095690..3099658hypothetical protein
LOC_Os09g06520OsAffx.27864.1.S1_x_at2/119+3095690..3099658hypothetical protein
LOC_Os09g06520OsAffx.27864.5.S1_x_at1/119+3095690..3099658hypothetical protein
LOC_Os09g06530OsAffx.29733.1.S1_at11/119+3103108..3104511hypothetical protein
LOC_Os09g06540OsAffx.2022.1.S1_at1/119+3108254..3110685retrotransposon protein, putative, unclassified
LOC_Os09g06550NANA9+3113277..3114272retrotransposon protein, putative, unclassified
LOC_Os09g06560Os.53771.1.A2_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06560Os.53771.1.A1_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06570Os.50216.1.S1_at11/119+3125678..3126160expressed protein
LOC_Os09g06580OsAffx.24386.2.S1_at11/119+3128207..3129193expressed protein
LOC_Os09g06590OsAffx.29734.1.S1_at11/119+3130087..3131619hypothetical protein
LOC_Os09g06600NANA9+3132719..3135097retrotransposon protein, putative, unclassified
LOC_Os09g06610NANA9+3135411..3136990retrotransposon protein, putative, unclassified
LOC_Os09g06620OsAffx.17579.1.S1_at11/119+3138079..3139353F-box domain containing protein, expressed
LOC_Os09g06634Os.10321.1.S1_at11/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06634OsAffx.27865.1.S1_x_at2/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53771.1.A1_at--132--2551Chr09:3122183..3122207 (25 bp)
AACTCCTGCCTCTAAATTATCTTGG
LOC_Os09g06560
Os.53771.1.A1_at--16--7371Chr09:3122227..3122251 (25 bp)
GTGAACTTAGTTCCTTTGATTCCAA
LOC_Os09g06560
Os.53771.1.A1_at--751--6031Chr09:3122344..3122368 (25 bp)
GAGGGTCTTTTCTGGTCAATTCGGT
LOC_Os09g06560
Os.53771.1.A1_at--115--9071Chr09:3122535..3122559 (25 bp)
TGCATTCTATGCAAGTCCCCGGAGT
LOC_Os09g06560
Os.53771.1.A1_at--897--7731Chr09:3122702..3122726 (25 bp)
GGTGATGCCCAAACCTGTTTTGACA
LOC_Os09g06560
Os.53771.1.A1_at--551--331Chr09:3122727..3122751 (25 bp)
ATACTTGAGCTGTCATTTCCTCTTG
LOC_Os09g06560
Os.53771.1.A1_at--471--4971Chr09:3122751..3122775 (25 bp)
GCATCATCTGACCTTGGTGCCAATA
LOC_Os09g06560
Os.53771.1.A1_at--197--10791Chr09:3122923..3122947 (25 bp)
TTGGGTCTGGACACGATTGCATTAG
LOC_Os09g06560
Os.53771.1.A1_at--1020--10751Chr09:3122978..3123002 (25 bp)
TTGACCGGTGCATCTTGAGGCTCAT
LOC_Os09g06560
Os.53771.1.A1_at--1082--4931Chr09:3123168..3123192 (25 bp)
GCATTGATGCTTGTTACACGCTTAA
LOC_Os09g06560
Os.53771.1.A1_at--73--2151Chr09:3123183..3123207 (25 bp)
ACACGCTTAAAACTTCCCATATTGC
LOC_Os09g06560
Target Sequence 
AACTCCTGCCTCTAAATTATCTTGGTTTGGTTTCAGTGAGAATGGTGAACTTAGTTCCTTTGATTCCAAGGGAATACTGA
GGGTCTTTTCTGGTCAATTCGGTGGAAGCTGGATTCCAATATTTAGTTCAATCAAGGCAAGAAAATCCGAAGATGAAAGC
CACTGGGTGGTGGGCTTAGATGCTAATAATATATTCTGCATTCTATGCAAGTCCCCGGAGTCCTATCCACAGGTGATGCC
CAAACCTGTTTTGACAATACTTGAGCTGTCATTTCCTCTTGCATCATCTGACCTTGGTGCCAATAGTTTGGAAACTGAAT
TCATGATGAGGAAACTGCATCTCTCACAGATTCAAAAGAAAATAGAAGAAATGGCTGCNTTGGGTCTGGACACGATTGCA
TTAGATGATGAAGCATTCAACATGGAGGCTGCACTTGACCGGTGCATCTTGAGGCTCATCTCCAGCTGCTGCAATGGTGA
TAAGCTTGTACGAGCTACCGAGCTTGCAAAATTACTAACACTGGAGAAGTCAATGAAGGGAGCATTGATGCTTGTTACAC
GCTTAAAACTTCCCATATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53771.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis