Browse Element(s) Details


OsAffx.6204.1.S1_at

Description tigr:9637.m00600
TID=OsAffx.6204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0829011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08224OsAffx.22722.1.S1_x_at1/119+4260796..4266702retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08240OsAffx.1647.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified
LOC_Os09g08240OsAffx.20565.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified
LOC_Os09g08254OsAffx.29760.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08254OsAffx.6202.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08270OsAffx.6203.1.S1_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.6203.1.S1_x_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.29764.1.S1_x_at1/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08280Os.50139.1.S1_at11/119+4276193..4276778expressed protein
LOC_Os09g08290OsAffx.6204.1.S1_at11/119+4285895..4287615hypothetical protein
LOC_Os09g08300OsAffx.17604.1.S1_at11/119+4289126..4290626expressed protein
LOC_Os09g08310OsAffx.19542.3.S1_x_at4/119+4292946..4296916retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08320OsAffx.29761.1.S1_at11/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_a_at1/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_x_at1/119+4298707..4299135NA
LOC_Os09g08330OsAffx.29762.1.S1_at11/119+4304471..4305088hypothetical protein
LOC_Os09g08340NANA9+4309675..4314365retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6204.1.S1_at--480--7192Chr02:12935278..12935297 (20 bp)
GTCGGAGGTTCATTCGCACACAAAA
NONE
OsAffx.6204.1.S1_at--806--6131Chr09:4287002..4287026 (25 bp)
GAGGGAAACTCTTGGATCACATCTT
LOC_Os09g08290
OsAffx.6204.1.S1_at--151--9251Chr09:4286967..4286991 (25 bp)
TCCTTCGCTCATTGTGAAACCATCA
LOC_Os09g08290
OsAffx.6204.1.S1_at--1075--3791Chr09:4286890..4286914 (25 bp)
CTCCATATCCCATGATTCGAACGTT
LOC_Os09g08290
OsAffx.6204.1.S1_at--249--10632Chr09:4286875..4286899 (25 bp)
TTCGAACGTTGAATCCTCACCTGAA
LOC_Os09g08290
OsAffx.6204.1.S1_at--1039--1571Chr09:4286109..4286133 (25 bp)
AGCTCAAATCTCTTCCTTCAGGTAT
LOC_Os09g08290
OsAffx.6204.1.S1_at--873--3471Chr09:4286091..4286115 (25 bp)
CAGGTATTCACTATGCTTTCTTGCA
LOC_Os09g08290
OsAffx.6204.1.S1_at--275--1391Chr09:4286016..4286040 (25 bp)
AGACCTCCAAACTCACAGCTGTGTT
LOC_Os09g08290
OsAffx.6204.1.S1_at--760--6751Chr09:4285994..4286018 (25 bp)
GTTAAAAAACCTTCGCTCTATGCTA
LOC_Os09g08290
OsAffx.6204.1.S1_at--589--631Chr09:4285975..4285999 (25 bp)
ATGCTAGGTTACTCACTTCAAGGCC
LOC_Os09g08290
OsAffx.6204.1.S1_at--617--911Chr09:4285946..4285970 (25 bp)
AGGCATTAGTCCTACCCTTTGTACT
LOC_Os09g08290
Target Sequence 
GTCGGAGGTTCATTCGCACACAAAACGAGGTCTGAAGGAGGGAAACTCTTGGATCACATCTTGGAGAACACCTCCTTCGC
TCATTGTGAAACCATCATAGAAATTGAGGATACACATGAGGAATCAACGTCCGAATCGGAGTATGCAACCTCCATATCCC
ATGATTCGAACGTTGAATCCTCACCTGAACCACGGGAACCGAAGGTGATCGAGTTACCCAAAACTGATCCACCTTCACAA
CCACTAGTTGAGCTCAAATCTCTTCCTTCAGGTATTCACTATGCTTTCTTGCATGGTGATATGGAGTTGCCAGTCATCAT
AAGAGAGAAGCTTTTTGATGATGAGACCTCCAAACTCACAGCTGTGTTAAAAAACCTTCGCTCTATGCTAGGTTACTCAC
TTCAAGGCCTCAAAGGCATTAGTCCTACCCTTTGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis