Browse Element(s) Details


OsAffx.6205.1.S1_at

Description tigr:9637.m00611
TID=OsAffx.6205.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0840011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08370Os.53191.1.S1_at1/119+4337025..4341044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08370OsAffx.4040.1.S1_at1/119+4337025..4341044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08379NANA9+4347090..4347513hypothetical protein
LOC_Os09g08390Os.12140.1.S1_a_at11/119+4348564..4354179CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g08400OsAffx.6205.1.S1_at11/119+4358015..4359123hypothetical protein
LOC_Os09g08410OsAffx.17605.1.S1_at11/119+4377766..4378171hypothetical protein
LOC_Os09g08420Os.12648.1.S1_at11/119+4381994..4385627Protein kinase G11A, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6205.1.S1_at--269--4811Chr09:4358392..4358416 (25 bp)
GCTCGGCTCCAGCAAGCACCAAGGG
LOC_Os09g08400
OsAffx.6205.1.S1_at--708--4171Chr09:4358318..4358342 (25 bp)
CCCTTCCACAGCCATGAGCTTAGTG
LOC_Os09g08400
OsAffx.6205.1.S1_at--1142--5911Chr09:4358303..4358327 (25 bp)
GAGCTTAGTGGTAGCCGCTGGATCT
LOC_Os09g08400
OsAffx.6205.1.S1_at--953--7491Chr09:4358296..4358320 (25 bp)
GTGGTAGCCGCTGGATCTGACCAAG
LOC_Os09g08400
OsAffx.6205.1.S1_at--797--1531Chr09:4358246..4358270 (25 bp)
AGCTTGGCAGCGCAAATCGGGTCGG
LOC_Os09g08400
OsAffx.6205.1.S1_at--108--7692Chr05:14187819..14187839 (21 bp)
GGGTCGACGACCTACCCAGCGGCAG
NONE
OsAffx.6205.1.S1_at--881--5071Chr09:4358158..4358182 (25 bp)
GCAGCGCCCTCAACGGCGAAGTGGC
LOC_Os09g08400
OsAffx.6205.1.S1_at--489--4731Chr09:4358135..4358159 (25 bp)
GCTGTGCGTGGCGTCATCCTTTTGC
LOC_Os09g08400
OsAffx.6205.1.S1_at--783--7531Chr09:4358128..4358152 (25 bp)
GTGGCGTCATCCTTTTGCTCATCCA
LOC_Os09g08400
OsAffx.6205.1.S1_at--834--4391Chr09:4358096..4358120 (25 bp)
GCCAAGAGTCGTCGCCTTCAAGCTG
LOC_Os09g08400
OsAffx.6205.1.S1_at--510--4451Chr09:4358083..4358107 (25 bp)
GCCTTCAAGCTGCACCAGTGGTTGG
LOC_Os09g08400
Target Sequence 
GCTCGGCTCCAGCAAGCACCAAGGGGAGCAGCGATTGGGTGGGGACGGAGATGGAGCAGCGACGTCGTCTTCTCCCCTTC
CACAGCCATGAGCTTAGTGGTAGCCGCTGGATCTGACCAAGCATGGGGCGGTGGGGGCGGAGATGGAGCTTGGCAGCGCA
AATCGGGTCGGTGGGTCGACGACCTACCCAGCGGCAGCACGGAGTGGGGGCTGCAGCCGCCGTCGAGCCTCAAGGCAGCG
CCCTCAACGGCGAAGTGGCTGTGCGTGGCGTCATCCTTTTGCTCATCCACTCCGTCGCCAAGAGTCGTCGCCTTCAAGCT
GCACCAGTGGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis