Browse Element(s) Details


OsAffx.6222.1.S1_x_at

Description tigr:9637.m00779
TID=OsAffx.6222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1021011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10180NANA9+5538419..5538931hypothetical protein
LOC_Os09g10190OsAffx.29786.1.S1_at10/119+5542051..5544026hypothetical protein
LOC_Os09g10190OsAffx.29786.1.S1_x_at10/119+5542051..5544026hypothetical protein
LOC_Os09g10190OsAffx.23450.1.S1_at2/119+5542051..5544026hypothetical protein
LOC_Os09g10190Os.46012.1.S1_at1/119+5542051..5544026hypothetical protein
LOC_Os09g10200Os.55370.1.S1_at11/119+5553239..5554029SKP1-like protein 1A, putative, expressed
LOC_Os09g10204Os.51444.1.S1_at11/119+5555531..5556221expressed protein
LOC_Os09g10210OsAffx.6222.1.S1_x_at11/119+5558196..5558420hypothetical protein
LOC_Os09g10220Os.45173.1.S1_x_at6/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10220Os.45976.1.S1_x_at1/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10220Os.45976.1.S1_at1/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10230OsAffx.29787.1.S1_at11/119+5573829..5574332SKP1-like protein 1A, putative
LOC_Os09g10240NANA9+5575424..5582937retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6222.1.S1_x_at--491--1511Chr09:5558349..5558373 (25 bp)
AGCAGCGGGAGAAGCGACAGCCTCC
LOC_Os09g10210
OsAffx.6222.1.S1_x_at--229--8071Chr09:5558342..5558366 (25 bp)
GGAGAAGCGACAGCCTCCGCACCGG
LOC_Os09g10210
OsAffx.6222.1.S1_x_at--950--2711Chr09:5558313..5558337 (25 bp)
AAGCAGTGGCCTCTGCCTCGTCAAG
LOC_Os09g10210
OsAffx.6222.1.S1_x_at--788--3971Chr09:5558285..5558309 (25 bp)
CGGGAGAGGCAACGGCGTCGGCATA
LOC_Os09g10210
OsAffx.6222.1.S1_x_at--1140--4952Chr04:18031481..18031559 (25 bp)
GCATAGGTGGCGACGATCCCGCTGT
NONE
OsAffx.6222.1.S1_x_at--922--271Chr09:5558263..5558287 (25 bp)
ATAGGTGGCGACGATCCCGCTGTGC
LOC_Os09g10210
OsAffx.6222.1.S1_x_at--21--10091Chr09:5558262..5558286 (25 bp)
TAGGTGGCGACGATCCCGCTGTGCA
LOC_Os09g10210
OsAffx.6222.1.S1_x_at--933--6371Chr09:5558251..5558275 (25 bp)
GATCCCGCTGTGCAGCTGCCTTGGC
LOC_Os09g10210
OsAffx.6222.1.S1_x_at--1100--7331Chr09:5558242..5558266 (25 bp)
GTGCAGCTGCCTTGGCCTCGGGCAA
LOC_Os09g10210
OsAffx.6222.1.S1_x_at--80--4291Chr09:5558227..5558251 (25 bp)
CCTCGGGCAAGCAACGGCGGCATGT
LOC_Os09g10210
OsAffx.6222.1.S1_x_at--385--3792Chr12:12471230..12471251 (22 bp)
CTCGGGCAAGCAACGGCGGCATGTC
NONE
Target Sequence 
AGCAGCGGGAGAAGCGACAGCCTCCGCACCGGCGACAAGCAGTGGCCTCTGCCTCGTCAAGCGGCGGGAGAGGCAACGGC
GTCGGCATAGGTGGCGACGATCCCGCTGTGCAGCTGCCTTGGCCTCGGGCAAGCAACGGCGGCATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6222.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis