Browse Element(s) Details


OsAffx.6233.1.S1_at

Description tigr:9637.m00855
TID=OsAffx.6233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g113008/11hypothetical protein
LOC_Os09g249243/11Sugar carrier protein A, putative, expressed
LOC_Os11g346603/11Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os12g138001/11Caffeic acid 3-O-methyltransferase, putative
LOC_Os09g391701/11Papain family cysteine protease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11250Os.24787.1.S1_at8/119+6245257..6248737co-chaperone GrpE family protein, expressed
LOC_Os09g11260OsAffx.29802.1.S1_at10/119+6249839..6250492hypothetical protein
LOC_Os09g11270Os.11452.1.S1_at11/119+6250864..6259438enhancer of polycomb, putative, expressed
LOC_Os09g11280OsAffx.17642.1.S1_at8/119+6261724..6262591hypothetical protein
LOC_Os09g11290OsAffx.17643.1.S1_x_at11/119+6265198..6265539Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os09g11300OsAffx.6233.1.S1_at8/119+6270930..6273949hypothetical protein
LOC_Os09g11300OsAffx.30202.1.S1_x_at1/119+6270930..6273949hypothetical protein
LOC_Os09g11300Os.51754.1.S1_at1/119+6270930..6273949hypothetical protein
LOC_Os09g11310OsAffx.6234.1.S1_at11/119+6275651..6276322hypothetical protein
LOC_Os09g11320OsAffx.29803.1.S1_at10/119+6284004..6288486hypothetical protein
LOC_Os09g11320Os.57362.1.S1_at1/119+6284004..6288486hypothetical protein
LOC_Os09g11330NANA9+6293425..6294952hypothetical protein
LOC_Os09g11339NANA9+6295478..6295656NA

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006869biological_processlipid transport
GO:0009414biological_processresponse to water deprivation
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008171molecular_functionO-methyltransferase activity
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
GO:0008289molecular_functionlipid binding
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6233.1.S1_at--183--4311Chr09:6273053..6273072 (20 bp)
GCGACGGTTTTAACCCGTCAGAGAT
LOC_Os09g11300
OsAffx.6233.1.S1_at--952--78729Chr12:7268375..7268398 (24 bp)
GGTTTTAACCCGTCAGAGATGACTT
NONE
OsAffx.6233.1.S1_at--620--104727Chr12:7268378..7268402 (25 bp)
TTAACCCGTCAGAGATGACTTATAT
NONE
OsAffx.6233.1.S1_at--778--63131Chr12:7268391..7268415 (25 bp)
GATGACTTATATACCGGTCAGAGAT
NONE
OsAffx.6233.1.S1_at--823--7391Chr09:6273104..6273128 (25 bp)
GTGATGGGTGTTTCACTCGTCACAG
LOC_Os09g11300
OsAffx.6233.1.S1_at--340--811Chr09:6273107..6273130 (24 bp)
ATGGGTGTTTCACTCGTCACAGGTC
LOC_Os09g11300
OsAffx.6233.1.S1_at--981--7731Chr09:6273110..6273130 (21 bp)
GGTGTTTCACTCGTCACAGGTCATA
LOC_Os09g11300
OsAffx.6233.1.S1_at--934--8771NONE
TGTTTCACTCGTCACAGGTCATAGA
NONE
OsAffx.6233.1.S1_at--477--10511NONE
TTCACTCGTCACAGGTCATAGAGAA
NONE
OsAffx.6233.1.S1_at--434--9691NONE
TCACAGGTCATAGAGAACAGGCACT
NONE
OsAffx.6233.1.S1_at--634--3471Chr09:6273843..6273867 (25 bp)
CAGGTCATAGAGAACAGGCACTGGT
LOC_Os09g11300
Target Sequence 
GCGACGGTTTTAACCCGTCAGAGATGACTTATATACCGGTCAGAGATGAGTTATCTGTGATGGGTGTTTCACTCGTCACA
GGTCATAGAGAACAGGCACTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis