Browse Element(s) Details


OsAffx.6297.1.S1_at

Description tigr:9637.m01360
TID=OsAffx.6297.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1627011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16220OsAffx.17736.1.S1_at11/119+9899753..9903720hypothetical protein
LOC_Os09g16230OsAffx.29870.1.S1_at11/119+9908175..9908868hypothetical protein
LOC_Os09g16240OsAffx.6295.1.S1_at11/119+9909745..9916710expressed protein
LOC_Os09g16240OsAffx.18675.1.A1_at1/119+9909745..9916710expressed protein
LOC_Os09g16250OsAffx.17737.1.S1_at11/119+9918342..9918698hypothetical protein
LOC_Os09g16260OsAffx.6296.1.S1_at11/119+9921133..9923650hypothetical protein
LOC_Os09g16270OsAffx.6297.1.S1_at11/119+9927174..9927782hypothetical protein
LOC_Os09g16280Os.52894.1.S1_at11/119+9932450..9933161expressed protein
LOC_Os09g16290OsAffx.29871.3.S1_at11/119+9944092..9952453ABC transporter family protein
LOC_Os09g16290Os.55739.1.S1_x_at1/119+9944092..9952453ABC transporter family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6297.1.S1_at--33--8431Chr09:9927204..9927228 (25 bp)
GGCCTGCTTGTTGAGCTATGCCAAA
LOC_Os09g16270
OsAffx.6297.1.S1_at--237--2311Chr09:9927226..9927250 (25 bp)
AAAGGTCCCGGAGCAAGGCATGCAC
LOC_Os09g16270
OsAffx.6297.1.S1_at--392--6911Chr09:9927291..9927315 (25 bp)
GTATCCATCTTCCATGAGCGCGGAT
LOC_Os09g16270
OsAffx.6297.1.S1_at--287--8031Chr09:9927335..9927359 (25 bp)
GGAGGGTAGAGGTCAGCTCCCCATC
LOC_Os09g16270
OsAffx.6297.1.S1_at--308--791Chr09:9927361..9927385 (25 bp)
ATGGGAATCGATGCCCTCGGAGTCT
LOC_Os09g16270
OsAffx.6297.1.S1_at--641--4291Chr09:9927401..9927425 (25 bp)
CCTTCAAACAGGGTGGCTGCCAATG
LOC_Os09g16270
OsAffx.6297.1.S1_at--295--8331Chr09:9927415..9927439 (25 bp)
GGCTGCCAATGGATCCGCTGCCAAA
LOC_Os09g16270
OsAffx.6297.1.S1_at--463--7971Chr09:9927487..9927511 (25 bp)
GGATCTGCCTCCGAACAGAGTTGCG
LOC_Os09g16270
OsAffx.6297.1.S1_at--133--6371Chr09:9927519..9927543 (25 bp)
GATCCATCGCCGCTGAACGGAGTCG
LOC_Os09g16270
OsAffx.6297.1.S1_at--761--7671Chr09:9927617..9927641 (25 bp)
GGGTCACCCAAGCTTTTCTCGTGGA
LOC_Os09g16270
OsAffx.6297.1.S1_at--553--1831Chr09:9927641..9927665 (25 bp)
ACGCTGCCGCCCATGTGAAAGGAGG
LOC_Os09g16270
Target Sequence 
GGCCTGCTTGTTGAGCTATGCCAAAGGTCCCGGAGCAAGGCATGCACGACCGTCGCCATGTCCATCCTTGTTAGCCTCGC
CGTCACCGTATCCATCTTCCATGAGCGCGGATCGGTCCAAGCCAGAGGGAGGGAGGGTAGAGGTCAGCTCCCCATCCATG
GGAATCGATGCCCTCGGAGTCTCCGCCACCAGATCCACCTTCAAACAGGGTGGCTGCCAATGGATCCGCTGCCAAACGGG
GTTGCCGCCTCCGGATCCGCCTCTGAACGGGGTCGCCGCTACCGGATCTGCCTCCGAACAGAGTTGCGGCCGCCGGATCC
ATCGCCGCTGAACGGAGTCGCCCAATCTCCGTTGCTGCCTGTGGACGCCGCCACCGTGGGGAAGGGTGATGGAGGGCGTG
CCTGTGGGGAATGGGGTCACCCAAGCTTTTCTCGTGGACGCTGCCGCCCATGTGAAAGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis