Browse Element(s) Details


OsAffx.6343.1.S1_at

Description tigr:9637.m01736
TID=OsAffx.6343.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2037011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20340OsAffx.6341.1.S1_at11/119+12202635..12207342hypothetical protein
LOC_Os09g20350Os.11944.1.S1_at11/119+12215432..12217337AP2 domain containing protein, expressed
LOC_Os09g20350Os.11944.1.S2_s_at11/119+12215432..12217337AP2 domain containing protein, expressed
LOC_Os09g20360OsAffx.6342.1.S1_at9/119+12219214..12221523hypothetical protein
LOC_Os09g20370OsAffx.6343.1.S1_at11/119+12227336..12228583hypothetical protein
LOC_Os09g20380NANA9+12239307..12242725transposon protein, putative, Mutator sub-class
LOC_Os09g20390OsAffx.17798.1.S1_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.1.A1_s_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.2.A1_at6/119+12250890..12253077trehalose-phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6343.1.S1_at--933--3951Chr09:12227372..12227396 (25 bp)
CGGAGGCCGGTGACCACGGAGGCAA
LOC_Os09g20370
OsAffx.6343.1.S1_at--683--8891Chr09:12227382..12227406 (25 bp)
TGACCACGGAGGCAAGGGAGGCGCG
LOC_Os09g20370
OsAffx.6343.1.S1_at--656--8871Chr09:12227460..12227484 (25 bp)
TGAGGCAGCTCGAGGTCACGGGTGA
LOC_Os09g20370
OsAffx.6343.1.S1_at--37--1031Chr09:12227472..12227496 (25 bp)
AGGTCACGGGTGAGCAGCAAAGAGA
LOC_Os09g20370
OsAffx.6343.1.S1_at--238--971Chr09:12227499..12227523 (25 bp)
AGGAGACGAGTGGTTCACCGTCGCC
LOC_Os09g20370
OsAffx.6343.1.S1_at--1104--10511Chr09:12227512..12227536 (25 bp)
TTCACCGTCGCCATTGAGGTCACTG
LOC_Os09g20370
OsAffx.6343.1.S1_at--512--4011Chr09:12227517..12227541 (25 bp)
CGTCGCCATTGAGGTCACTGTTCGG
LOC_Os09g20370
OsAffx.6343.1.S1_at--127--4331Chr09:12227522..12227546 (25 bp)
CCATTGAGGTCACTGTTCGGCGCTG
LOC_Os09g20370
OsAffx.6343.1.S1_at--265--51Chr09:12227524..12227548 (25 bp)
ATTGAGGTCACTGTTCGGCGCTGAG
LOC_Os09g20370
OsAffx.6343.1.S1_at--502--7591Chr09:12228528..12228552 (25 bp)
GGGCAACATGGCTAGAGGTCACTTC
LOC_Os09g20370
OsAffx.6343.1.S1_at--608--8231Chr09:12228529..12228553 (25 bp)
GGCAACATGGCTAGAGGTCACTTCA
LOC_Os09g20370
Target Sequence 
CGGAGGCCGGTGACCACGGAGGCAAGGGAGGCGCGGTCGGCGGCAAGGCCGAGGCAGCTCGGGGTCGCGGGTGAGCGCCG
TCGGCGGGTGAGGCAGCTCGAGGTCACGGGTGAGCAGCAAAGAGAAGAGGAGACGAGTGGTTCACCGTCGCCATTGAGGT
CACTGTTCGGCGCTGAGGCGGAAGCGGTGGCGCTGCTAATTCTCCCTTCCCTGGAGACGGCGTCAGGGGCAACATGGCTA
GAGGTCACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis