Browse Element(s) Details


OsAffx.6348.1.S1_at

Description tigr:9637.m01776
TID=OsAffx.6348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2075011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20710OsAffx.29946.1.S1_at10/119+12474469..12476640RNA recognition motif family protein
LOC_Os09g20720NANA9+12483351..12483830Strictosidine synthase 1 precursor, putative
LOC_Os09g20730OsAffx.27726.2.S1_at11/119+12484713..12486169hypothetical protein
LOC_Os09g20730Os.55138.1.S1_x_at1/119+12484713..12486169hypothetical protein
LOC_Os09g20740OsAffx.6347.1.S1_at11/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20740Os.54747.1.S1_at1/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20750OsAffx.6348.1.S1_at11/119+12501624..12502148hypothetical protein
LOC_Os09g20760NANA9+12506674..12508442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g20770OsAffx.18314.1.S1_at1/119+12511574..12516407hypothetical protein
LOC_Os09g20780OsAffx.29946.1.S1_at5/119+12519956..12520243RNA recognition motif family protein
LOC_Os09g20790OsAffx.6349.1.S1_at11/119+12520761..12520997hypothetical protein
LOC_Os09g20800OsAffx.29947.1.S1_at2/119+12527112..12528106hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6348.1.S1_at--550--1031Chr09:12501986..12502010 (25 bp)
AGGTGCGACGTCGTGGATATCCCAT
LOC_Os09g20750
OsAffx.6348.1.S1_at--936--4971Chr09:12501952..12501976 (25 bp)
GCATCGGTGATGATCGGTGTGCACT
LOC_Os09g20750
OsAffx.6348.1.S1_at--732--7731Chr09:12501937..12501961 (25 bp)
GGTGTGCACTTGAGGCGCGTCATAC
LOC_Os09g20750
OsAffx.6348.1.S1_at--618--7131Chr09:12501919..12501943 (25 bp)
GTCATACGCGCTACCCGTTTAAGCT
LOC_Os09g20750
OsAffx.6348.1.S1_at--294--9791Chr09:12501900..12501924 (25 bp)
TAAGCTCGACTGCATGTCCGTTGGC
LOC_Os09g20750
OsAffx.6348.1.S1_at--1011--10471Chr09:12501780..12501804 (25 bp)
TTACAACCAGTCAACGGGAACCATG
LOC_Os09g20750
OsAffx.6348.1.S1_at--441--1731Chr09:12501761..12501785 (25 bp)
ACCATGGAGCGCAACAGAGAACCTG
LOC_Os09g20750
OsAffx.6348.1.S1_at--1144--5431Chr09:12501743..12501767 (25 bp)
GAACCTGTGGATTTCACTGGTACAC
LOC_Os09g20750
OsAffx.6348.1.S1_at--1028--8571Chr09:12501726..12501750 (25 bp)
TGGTACACCTTTCTGGATATCCGAC
LOC_Os09g20750
OsAffx.6348.1.S1_at--289--3231Chr09:12501693..12501717 (25 bp)
CAAGATCTTTGTGATCGGGTGCCGA
LOC_Os09g20750
OsAffx.6348.1.S1_at--952--471Chr09:12501680..12501704 (25 bp)
ATCGGGTGCCGAACGTTTTCATATA
LOC_Os09g20750
Target Sequence 
AGGTGCGACGTCGTGGATATCCCATTCCCGTTCGGCATCGGTGATGATCGGTGTGCACTTGAGGCGCGTCATACGCGCTA
CCCGTTTAAGCTCGACTGCATGTCCGTTGGCGGCACCAGCAAGCCTTTCTTCAGGGGTATGGAGGTGACCAAGATCTCCC
TGGCAGACGGCAAGGCCTGGATGAAGATGAACATATCCCAGAACTGTTACAACCAGTCAACGGGAACCATGGAGCGCAAC
AGAGAACCTGTGGATTTCACTGGTACACCTTTCTGGATATCCGACAAGGATAACAAGATCTTTGTGATCGGGTGCCGAAC
GTTTTCATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis