Browse Element(s) Details


OsAffx.6349.1.S1_at

Description tigr:9637.m01780
TID=OsAffx.6349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2079011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20740OsAffx.6347.1.S1_at11/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20740Os.54747.1.S1_at1/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20750OsAffx.6348.1.S1_at11/119+12501624..12502148hypothetical protein
LOC_Os09g20760NANA9+12506674..12508442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g20770OsAffx.18314.1.S1_at1/119+12511574..12516407hypothetical protein
LOC_Os09g20780OsAffx.29946.1.S1_at5/119+12519956..12520243RNA recognition motif family protein
LOC_Os09g20790OsAffx.6349.1.S1_at11/119+12520761..12520997hypothetical protein
LOC_Os09g20800OsAffx.29947.1.S1_at2/119+12527112..12528106hypothetical protein
LOC_Os09g20810NANA9+12535620..12538846Strictosidine synthase family protein
LOC_Os09g20820OsAffx.6350.1.S1_at10/119+12539721..12543788Enolase, putative, expressed
LOC_Os09g20830Os.9890.1.S1_at9/119+12544956..12549095pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6349.1.S1_at--148--10871Chr09:12520943..12520967 (25 bp)
TTGGCCTTGTCGCTCGTTGACTCGT
LOC_Os09g20790
OsAffx.6349.1.S1_at--610--4431Chr09:12520940..12520964 (25 bp)
GCCTTGTCGCTCGTTGACTCGTCGG
LOC_Os09g20790
OsAffx.6349.1.S1_at--232--10831Chr09:12520937..12520961 (25 bp)
TTGTCGCTCGTTGACTCGTCGGCCG
LOC_Os09g20790
OsAffx.6349.1.S1_at--902--4991Chr09:12520892..12520916 (25 bp)
GCAGGCACCGGGATGGCCCTGTCCA
LOC_Os09g20790
OsAffx.6349.1.S1_at--368--4252Chr06:6968786..6968805 (20 bp)
CCGGGATGGCCCTGTCCAGCAGCGA
NONE
OsAffx.6349.1.S1_at--174--6232Chr06:6968786..6968805 (20 bp)
GATGGCCCTGTCCAGCAGCGAGTTC
NONE
OsAffx.6349.1.S1_at--820--871Chr09:12520880..12520904 (25 bp)
ATGGCCCTGTCCAGCAGCGAGTTCA
LOC_Os09g20790
OsAffx.6349.1.S1_at--698--8411Chr09:12520878..12520902 (25 bp)
GGCCCTGTCCAGCAGCGAGTTCATG
LOC_Os09g20790
OsAffx.6349.1.S1_at--202--8711Chr09:12520873..12520897 (25 bp)
TGTCCAGCAGCGAGTTCATGCCCGC
LOC_Os09g20790
OsAffx.6349.1.S1_at--248--1511Chr09:12520868..12520892 (25 bp)
AGCAGCGAGTTCATGCCCGCACTCG
LOC_Os09g20790
OsAffx.6349.1.S1_at--36--5071Chr09:12520867..12520891 (25 bp)
GCAGCGAGTTCATGCCCGCACTCGT
LOC_Os09g20790
Target Sequence 
TTGGCCTTGTCGCTCGTTGACTCGTCGGCCGCGGCGCCGAGCCCCGCCGACGCAGGCACCGGGATGGCCCTGTCCAGCAG
CGAGTTCATGCCCGCACTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis