Browse Element(s) Details


OsAffx.6376.1.S1_at

Description tigr:9637.m02035
TID=OsAffx.6376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2375010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23730OsAffx.29994.1.S1_s_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23730Os.49541.1.S1_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23740Os.19425.1.S1_at11/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_x_at10/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_at8/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23750OsAffx.6376.1.S1_at10/119+14124906..14126182hypothetical protein
LOC_Os09g23760OsAffx.17865.1.S1_at11/119+14141914..14143375hypothetical protein
LOC_Os09g23770OsAffx.6378.1.S1_at10/119+14147038..14148472expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6376.1.S1_at--1098--7611Chr09:14125018..14125042 (25 bp)
GGGAACATCGCCACATCAGCACATT
LOC_Os09g23750
OsAffx.6376.1.S1_at--902--391Chr09:14125032..14125056 (25 bp)
ATCAGCACATTTTTCTTGGTCTCAG
LOC_Os09g23750
OsAffx.6376.1.S1_at--688--10551Chr09:14125044..14125068 (25 bp)
TTCTTGGTCTCAGATTATGCTGTTA
LOC_Os09g23750
OsAffx.6376.1.S1_at--862--10131Chr09:14125059..14125083 (25 bp)
TATGCTGTTAACAATGACATTGCAG
LOC_Os09g23750
OsAffx.6376.1.S1_at--815--5671NONE
GACATTGCAGTGAGATGTGACATAT
NONE
OsAffx.6376.1.S1_at--2--791Chr09:14125088..14125214 (25 bp)
ATGTGACATATTGGCGTCGATGAGA
LOC_Os09g23750
OsAffx.6376.1.S1_at--209--1571Chr09:14125259..14125283 (25 bp)
AGCTAATTGTTTGGAGTACTACAGA
LOC_Os09g23750
OsAffx.6376.1.S1_at--501--5511Chr09:14125282..14125301 (20 bp)
GAAACGGTTATCACTGCCGGGTCCG
LOC_Os09g23750
OsAffx.6376.1.S1_at--149--7711Chr09:14125902..14125926 (25 bp)
GGGTCCGATTCCTCCTATTCGCCTT
LOC_Os09g23750
OsAffx.6376.1.S1_at--989--7971Chr09:14126041..14126065 (25 bp)
GGATGACGAACTCCTTGTGGCGCAA
LOC_Os09g23750
OsAffx.6376.1.S1_at--1090--1831Chr09:14126046..14126070 (25 bp)
ACGAACTCCTTGTGGCGCAACAGCA
LOC_Os09g23750
Target Sequence 
GGGAACATCGCCACATCAGCACATTTTTCTTGGTCTCAGATTATGCTGTTAACAATGACATTGCAGTGAGATGTGACATA
TTGGCGTCGATGAGAACTAAATGTTTTGGGGAGAACTATCTTGTTGAAAGGGGCAAGATAGCTAATTGTTTGGAGTACTA
CAGAAACGGTTATCACTGCCGGGTCCGATTCCTCCTATTCGCCTTCCTCTCCCGTGCCCTCGCCTCTGCCCTCCTCTCCC
GCTTCCCCTTCACCTCCTCCTCCAACGACAAACGACTTCGGCCCCTCGCCAACAACCTTGAGCGACGCGGCCTCGGCGGG
GATGACGAACTCCTTGTGGCGCAACAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis