Browse Element(s) Details


OsAffx.6397.1.S1_at

Description tigr:9637.m02225
TID=OsAffx.6397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2569011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25630OsAffx.17893.1.S1_x_at11/119+15394296..15394811hypothetical protein
LOC_Os09g25630OsAffx.17893.1.S1_at11/119+15394296..15394811hypothetical protein
LOC_Os09g25640Os.49473.1.S1_at11/119+15399723..154054135' nucleotidase family protein, putative, expressed
LOC_Os09g25650OsAffx.17894.1.S1_at11/119+15407553..15414547GEX2, putative, expressed
LOC_Os09g25660NANA9+15415087..15416486transposon protein, putative, Pong sub-class
LOC_Os09g25670NANA9+15417299..15418558transposon protein, putative, Pong sub-class
LOC_Os09g25679NANA9+15418768..15419206NA
LOC_Os09g25690OsAffx.6397.1.S1_at11/119+15419769..15420566hypothetical protein
LOC_Os09g25700OsAffx.6398.1.S1_at11/119+15421387..15423389hypothetical protein
LOC_Os09g25710OsAffx.6399.1.S1_at11/119+15425337..15425864expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_s_at11/119+15429675..15430148expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_at11/119+15429675..15430148expressed protein
LOC_Os09g25730NANA9+15430738..15432537transposon protein, putative, unclassified
LOC_Os09g25740OsAffx.30020.1.A1_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_x_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_at11/119+15437140..15439298expressed protein
LOC_Os09g25760Os.6961.1.S1_a_at11/119+15443235..15445530senescence-associated protein DH, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6397.1.S1_at--604--4911Chr09:15420305..15420329 (25 bp)
GCTTCTGGGTCTGGCTCAAGGTCGA
LOC_Os09g25690
OsAffx.6397.1.S1_at--231--2891Chr09:15420288..15420312 (25 bp)
AAGGTCGAGTGCTGGTTCAAGCGTA
LOC_Os09g25690
OsAffx.6397.1.S1_at--828--1631Chr09:15420269..15420293 (25 bp)
AGCGTAGGGTCATCAGCTGGATCTA
LOC_Os09g25690
OsAffx.6397.1.S1_at--960--8551Chr09:15420252..15420276 (25 bp)
TGGATCTAGCGCTGGTTCTGGAGCA
LOC_Os09g25690
OsAffx.6397.1.S1_at--852--911Chr09:15420228..15420252 (25 bp)
AGGCTCATATGCTGGCTCTGGTGCT
LOC_Os09g25690
OsAffx.6397.1.S1_at--1107--2891Chr09:15420145..15420169 (25 bp)
AAGGTCAAGGTTATGGCTCTGGCCA
LOC_Os09g25690
OsAffx.6397.1.S1_at--95--2971Chr09:15420074..15420098 (25 bp)
AATGGCTTTGGCTCAGGATATGGTG
LOC_Os09g25690
OsAffx.6397.1.S1_at--94--2311Chr09:15419971..15419995 (25 bp)
AAAGGAATGCCTCTGGCTCAGGATA
LOC_Os09g25690
OsAffx.6397.1.S1_at--488--1071Chr09:15419929..15419953 (25 bp)
AGGGCCACGGTTATGGTCAAGGATC
LOC_Os09g25690
OsAffx.6397.1.S1_at--359--8611Chr09:15419898..15419922 (25 bp)
TGGTGAAGGCCATGGCTCAGGACAT
LOC_Os09g25690
OsAffx.6397.1.S1_at--718--271Chr09:15419817..15419841 (25 bp)
ATATGGAAATGGTTCAGGCTCAGGC
LOC_Os09g25690
Target Sequence 
GCTTCTGGGTCTGGCTCAAGGTCGAGTGCTGGTTCAAGCGTAGGGTCATCAGCTGGATCTAGCGCTGGTTCTGGAGCAGG
CTCATATGCTGGCTCTGGTGCTGGTTCGGGATCTGGTTATAATCAAGGTCAAGGAACAGGTGAAGGTGAAGGTGAAGGTC
AAGGTCAAGGTTATGGCTCTGGCCATGGAGCAGGCACAGGGTCAGGGTATGGCGAGGGACATGGTGAAGGAAATGGCTTT
GGCTCAGGATATGGTGAGGGGCATGGCGAAGGCTACGGTGAAGGAAATGGCTCTGGCTCAGGATATGGTGAGGGGCATGG
TGAAGGCCATGGTCAAAGGAATGCCTCTGGCTCAGGATATGGCGACGGGCATGGTGAGGGCCACGGTTATGGTCAAGGAT
CTGGTTATGGTGAAGGCCATGGCTCAGGACATGGCCAAGGATCAGGGTCAGGCTATGGTGAAGGATATGGTAAAGGTTCA
GGCAATGGATATGGAAATGGTTCAGGCTCAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis