Browse Element(s) Details


OsAffx.6418.1.S1_at

Description tigr:9637.m02442
TID=OsAffx.6418.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2773011/11HVA22 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27690Os.8438.1.S1_at11/119+16851237..16853657expressed protein
LOC_Os09g27690OsAffx.30062.1.S1_at7/119+16851237..16853657expressed protein
LOC_Os09g27700Os.20136.1.S1_a_at11/119+16854329..16860063microtubule associated protein family protein, putative, expressed
LOC_Os09g27710OsAffx.17938.1.S1_at11/119+16866459..16867177hypothetical protein
LOC_Os09g27720OsAffx.17939.1.S1_at11/119+16869210..16869963hypothetical protein
LOC_Os09g27730OsAffx.6418.1.S1_s_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27730OsAffx.6418.1.S1_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27740OsAffx.6419.1.S1_at11/119+16880452..16881137hypothetical protein
LOC_Os09g27750Os.12201.1.S1_at11/119+16885039..168866041-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os09g27760NANA9+16889521..16892468retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27770NANA9+16895684..16898608retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27780Os.46995.1.S1_x_at1/119+16899085..16902015retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6418.1.S1_at--53--2971Chr09:16874571..16874595 (25 bp)
AATGGCTGGTGTACTGGATACTGTA
LOC_Os09g27730
OsAffx.6418.1.S1_at--1115--8331Chr09:16874574..16874598 (25 bp)
GGCTGGTGTACTGGATACTGTACTC
LOC_Os09g27730
OsAffx.6418.1.S1_at--882--1951Chr09:16874583..16874607 (25 bp)
ACTGGATACTGTACTCCCTCATCAC
LOC_Os09g27730
OsAffx.6418.1.S1_at--7--9691Chr09:16874604..16874628 (25 bp)
TCACCCTCATGGAAATGGCACTCCA
LOC_Os09g27730
OsAffx.6418.1.S1_at--34--2971Chr09:16874617..16874641 (25 bp)
AATGGCACTCCATAAAGTCTTGTAC
LOC_Os09g27730
OsAffx.6418.1.S1_at--447--8511Chr09:16874619..16874643 (25 bp)
TGGCACTCCATAAAGTCTTGTACTG
LOC_Os09g27730
OsAffx.6418.1.S1_at--265--8251Chr09:16874620..16874644 (25 bp)
GGCACTCCATAAAGTCTTGTACTGG
LOC_Os09g27730
OsAffx.6418.1.S1_at--899--3551Chr09:16874627..16874739 (25 bp)
CATAAAGTCTTGTACTGGATACCGT
LOC_Os09g27730
OsAffx.6418.1.S1_at--142--1251Chr09:16874630..16874742 (25 bp)
AAAGTCTTGTACTGGATACCGTTAT
LOC_Os09g27730
OsAffx.6418.1.S1_at--1051--1131Chr09:16874632..16874744 (25 bp)
AGTCTTGTACTGGATACCGTTATGG
LOC_Os09g27730
OsAffx.6418.1.S1_at--144--9571Chr09:16874634..16874746 (25 bp)
TCTTGTACTGGATACCGTTATGGTA
LOC_Os09g27730
Target Sequence 
AATGGCTGGTGTACTGGATACTGTACTCCCTCATCACCCTCATGGAAATGGCACTCCATAAAGTCTTGTACTGGATACCG
TTATGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis