Browse Element(s) Details


OsAffx.6418.1.S1_s_at

Description tigr:9637.m02442
TID=OsAffx.6418.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2773011/11HVA22 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27690Os.8438.1.S1_at11/119+16851237..16853657expressed protein
LOC_Os09g27690OsAffx.30062.1.S1_at7/119+16851237..16853657expressed protein
LOC_Os09g27700Os.20136.1.S1_a_at11/119+16854329..16860063microtubule associated protein family protein, putative, expressed
LOC_Os09g27710OsAffx.17938.1.S1_at11/119+16866459..16867177hypothetical protein
LOC_Os09g27720OsAffx.17939.1.S1_at11/119+16869210..16869963hypothetical protein
LOC_Os09g27730OsAffx.6418.1.S1_s_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27730OsAffx.6418.1.S1_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27740OsAffx.6419.1.S1_at11/119+16880452..16881137hypothetical protein
LOC_Os09g27750Os.12201.1.S1_at11/119+16885039..168866041-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os09g27760NANA9+16889521..16892468retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27770NANA9+16895684..16898608retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27780Os.46995.1.S1_x_at1/119+16899085..16902015retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6418.1.S1_s_at--1047--811Chr09:16874741..16874765 (25 bp)
ATGGTACGAGGCGAAGGTCCTGTTC
LOC_Os09g27730
OsAffx.6418.1.S1_s_at--43--7571Chr09:16874797..16874821 (25 bp)
GGGCGTCGTTCATCTACGACAAGTT
LOC_Os09g27730
OsAffx.6418.1.S1_s_at--22--5951Chr09:16874895..16874919 (25 bp)
GAGCACCAGTCGCACGTCGTCAGAG
LOC_Os09g27730
OsAffx.6418.1.S1_s_at--716--9351Chr09:16874904..16875070 (25 bp)
TCGCACGTCGTCAGAGGCTGAGGAT
LOC_Os09g27730
OsAffx.6418.1.S1_s_at--793--4651Chr09:16875072..16875096 (25 bp)
GCGTGCACCGAGGAACGGATCGAAT
LOC_Os09g27730
OsAffx.6418.1.S1_s_at--681--8891Chr09:16875116..16875140 (25 bp)
TGACGAAGGACAGAACCAAGCCGGT
LOC_Os09g27730
OsAffx.6418.1.S1_s_at--58--1091Chr09:16875142..16875166 (25 bp)
AGGGCTCATGTCGTTCACGAAACTA
LOC_Os09g27730
OsAffx.6418.1.S1_s_at--81--8412Chr09:16875187..16875211 (25 bp)
GGCGCCCTTGCTGTGTAAATGAGGA
LOC_Os09g27730
OsAffx.6418.1.S1_s_at--230--8013Chr09:16875222..16875246 (25 bp)
GGAGGCCCTGAAGAGCCTATTCAGT
LOC_Os09g27730
OsAffx.6418.1.S1_s_at--622--8571Chr09:16875246..16875270 (25 bp)
TGGATTGGCTGTAGCACCACTAGCT
LOC_Os09g27730
OsAffx.6418.1.S1_s_at--25--5091Chr09:16875259..16875283 (25 bp)
GCACCACTAGCTATAGCATTCAGGT
LOC_Os09g27730
Target Sequence 
ATGGTACGAGGCGAAGGTCCTGTTCGTGGCGTGGCTGGTGCTGCCTCAGTTCAGGGGGGCGTCGTTCATCTACGACAAGT
TCGTCAGGGAGCAGCTCAAGAAGAACAGGGTGAAGCTGCACGAACACCACGGCCATGGCCATGGCCACGCCGACGAGCAC
CAGTCGCACGTCGTCAGAGGCTGAGGATGGCGTGCACCGAGGAACGGATCGAATGTATGTTTGTTAATTAATCTGACGAA
GGACAGAACCAAGCCGGTGAGGGCTCATGTCGTTCACGAAACTAGAACCTACGGCGCGCTTCGCGGCGCCCTTGCTGTGT
AAATGAGGAAAATAAATAAGGAGGCCCTGAAGAGCCTATTCAGTGGATTGGCTGTAGCACCACTAGCTATAGCATTCAGG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6418.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis