Browse Element(s) Details


OsAffx.6424.1.S1_at

Description tigr:9637.m02483
TID=OsAffx.6424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2813011/11dioscorin A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28080NANA9+17048048..17051339retrotransposon protein, putative, unclassified
LOC_Os09g28090NANA9+17052919..17053350retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28100Os.27663.1.A1_at11/119+17058794..17061350Rhomboid family protein, expressed
LOC_Os09g28110Os.10060.1.S1_at11/119+17061565..17066526hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g28120Os.48051.1.S1_at11/119+17070782..17073107F-box domain containing protein, expressed
LOC_Os09g28130OsAffx.6424.1.S1_at11/119+17074189..17074708dioscorin A, putative, expressed
LOC_Os09g28140NANA9+17075443..17075769retrotransposon protein, putative, unclassified
LOC_Os09g28150Os.49643.1.S1_at11/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28150Os.54455.1.S1_at1/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28160Os.23183.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28160OsAffx.17942.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28170OsAffx.26553.2.S1_at2/119+17089942..17090322hypothetical protein
LOC_Os09g28180Os.18717.2.S1_at11/119+17090957..17094316D-mannose binding lectin family protein, expressed
LOC_Os09g28180OsAffx.27348.1.S1_x_at2/119+17090957..17094316D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6424.1.S1_at--606--7351Chr09:17074633..17074657 (25 bp)
GTGAAGGAGCCTGTTGATCCATCGA
LOC_Os09g28130
OsAffx.6424.1.S1_at--1071--6631Chr09:17074621..17074645 (25 bp)
GTTGATCCATCGACCTGGGTAGATA
LOC_Os09g28130
OsAffx.6424.1.S1_at--531--2431Chr09:17074597..17074621 (25 bp)
AAAACCTCAGGCTACTACAGATACG
LOC_Os09g28130
OsAffx.6424.1.S1_at--797--911Chr09:17074589..17074613 (25 bp)
AGGCTACTACAGATACGACGGCTCC
LOC_Os09g28130
OsAffx.6424.1.S1_at--875--2191Chr09:17074561..17074585 (25 bp)
ACAACACCGCCTTGCACTGAAGGAG
LOC_Os09g28130
OsAffx.6424.1.S1_at--579--3331Chr09:17074547..17074571 (25 bp)
CACTGAAGGAGTGATCTGGACGATC
LOC_Os09g28130
OsAffx.6424.1.S1_at--1010--9451Chr09:17074538..17074557 (20 bp)
TCTGGACGATCATGAGCAAGATAGG
LOC_Os09g28130
OsAffx.6424.1.S1_at--823--6331Chr09:17074367..17074391 (25 bp)
GATGCATCGAAGGAGCAGATTGACT
LOC_Os09g28130
OsAffx.6424.1.S1_at--1023--5031Chr09:17074353..17074377 (25 bp)
GCAGATTGACTTGCTCAAGACAGTG
LOC_Os09g28130
OsAffx.6424.1.S1_at--194--1091Chr09:17074243..17074356 (25 bp)
AGTGGCTACGACTGTGGAACCAAAT
LOC_Os09g28130
OsAffx.6424.1.S1_at--59--8191Chr09:17074228..17074252 (25 bp)
GGAACCAAATGCACGGCCAGCTCAG
LOC_Os09g28130
Target Sequence 
GTGAAGGAGCCTGTTGATCCATCGACCTGGGTAGATAAAACCTCAGGCTACTACAGATACGACGGCTCCCTCACAACACC
GCCTTGCACTGAAGGAGTGATCTGGACGATCATGAGCAAGATAGGAGATGCATCGAAGGAGCAGATTGACTTGCTCAAGA
CAGTGGCTACGACTGTGGAACCAAATGCACGGCCAGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis