Browse Element(s) Details


OsAffx.6434.1.S1_at

Description tigr:9637.m02569
TID=OsAffx.6434.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2908010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29030OsAffx.17958.1.S1_at11/119+17634624..17635178hypothetical protein
LOC_Os09g29040NANA9+17640165..17640861hypothetical protein
LOC_Os09g29050OsAffx.30071.1.S1_at6/119+17641594..17642559Mitochondrial carrier protein
LOC_Os09g29060Os.49593.1.S1_x_at11/119+17644486..17647500expressed protein
LOC_Os09g29070Os.26384.1.S1_at10/119+17647474..17652620Glucose-6-phosphate isomerase, putative, expressed
LOC_Os09g29080OsAffx.6434.1.S1_at10/119+17658912..17661226expressed protein
LOC_Os09g29080Os.51431.1.S1_at9/119+17658912..17661226expressed protein
LOC_Os09g29090OsAffx.9699.1.S1_at1/119+17666908..17671358retrotransposon protein, putative, unclassified
LOC_Os09g29100Os.18607.1.S1_at11/119+17679695..17682506Cyclin delta-2, putative, expressed
LOC_Os09g29110OsAffx.17959.1.S1_at11/119+17683689..17684432hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009773biological_processphotosynthetic electron transport in photosystem I
GO:0009941cellular_componentchloroplast envelope
GO:0030093cellular_componentphotosystem I (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6434.1.S1_at--184--31NONE
ATTGGCGTCGAGAGAGCTCAGGCTC
NONE
OsAffx.6434.1.S1_at--35--4831Chr09:17659900..17659924 (25 bp)
GCTCAGGCTCATAAGGTCTATACCA
LOC_Os09g29080
OsAffx.6434.1.S1_at--512--9551Chr09:17659884..17659908 (25 bp)
TCTATACCAGGTTTTTGTTTATCTT
LOC_Os09g29080
OsAffx.6434.1.S1_at--1143--6811Chr09:17659868..17659892 (25 bp)
GTTTATCTTGTATCTTCCAAATGCT
LOC_Os09g29080
OsAffx.6434.1.S1_at--193--4971Chr09:17659841..17659865 (25 bp)
GCATAATATGCAATTTCCTGAGAGT
LOC_Os09g29080
OsAffx.6434.1.S1_at--1110--6011Chr09:17659822..17659846 (25 bp)
GAGAGTATTTCATCCAATGTTTCAT
LOC_Os09g29080
OsAffx.6434.1.S1_at--734--2991Chr09:17659807..17659831 (25 bp)
AATGTTTCATCTATCAATGATGCGC
LOC_Os09g29080
OsAffx.6434.1.S1_at--778--2991Chr09:17659792..17659816 (25 bp)
AATGATGCGCTTTACTGTGGCTCAC
LOC_Os09g29080
OsAffx.6434.1.S1_at--1090--10331Chr09:17659782..17659806 (25 bp)
TTTACTGTGGCTCACCTCTACAAAC
LOC_Os09g29080
OsAffx.6434.1.S1_at--614--1751Chr09:17659769..17659793 (25 bp)
ACCTCTACAAACCACTCTTATGCAG
LOC_Os09g29080
OsAffx.6434.1.S1_at--539--3331Chr09:17659757..17659781 (25 bp)
CACTCTTATGCAGTTGGACTCTGAA
LOC_Os09g29080
Target Sequence 
ATTGGCGTCGAGAGAGCTCAGGCTCATAAGGTCTATACCAGGTTTTTGTTTATCTTGTATCTTCCAAATGCTATGCATAA
TATGCAATTTCCTGAGAGTATTTCATCCAATGTTTCATCTATCAATGATGCGCTTTACTGTGGCTCACCTCTACAAACCA
CTCTTATGCAGTTGGACTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis