Browse Element(s) Details


OsAffx.6453.1.S1_at

Description tigr:9637.m02720
TID=OsAffx.6453.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3041411/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30400Os.20028.1.S1_at11/119+18495951..18500217WRKY DNA binding domain containing protein, expressed
LOC_Os09g30410Os.51374.1.S1_at10/119+18507898..18509774expressed protein
LOC_Os09g30414OsAffx.6453.1.S1_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414Os.11197.2.S1_x_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414OsAffx.14464.1.S1_x_at1/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30418Os.28300.2.S2_s_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S1_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S2_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.22573.1.S1_x_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.57460.1.S1_x_at8/119+18523286..18528649Hsp90 protein
LOC_Os09g30434Os.11197.2.S1_x_at5/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30434OsAffx.14464.1.S1_x_at1/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30438Os.28300.2.S2_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.22573.1.S1_x_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S2_s_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S1_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.57460.1.S1_x_at8/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30442OsAffx.30100.1.S1_at11/119+18541175..18541541hypothetical protein
LOC_Os09g30446OsAffx.17968.1.S1_at11/119+18542825..18547989Sodium/hydrogen exchanger family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6453.1.S1_at--870--8972Chr09:18534550..18534574 (25 bp)
TGAACACTATACTACCACAAGAGGC
NONE
OsAffx.6453.1.S1_at--796--2792Chr09:18534568..18534592 (25 bp)
AAGAGGCAGCAGCTCACACAGTGAA
NONE
OsAffx.6453.1.S1_at--588--8352Chr09:18534635..18534659 (25 bp)
GGCGTGAAATCCACTTGTAGGCTAA
NONE
OsAffx.6453.1.S1_at--6--8292Chr09:18534654..18534678 (25 bp)
GGCTAAAATAAACCGCAAATCCACT
NONE
OsAffx.6453.1.S1_at--1067--8612Chr09:18534695..18534719 (25 bp)
TGGGTTCGCGGCTCACCGACCAACA
NONE
OsAffx.6453.1.S1_at--1032--10032Chr09:18534724..18534748 (25 bp)
TAGTCTACCCACTTACACCGTCTAT
NONE
OsAffx.6453.1.S1_at--115--1792Chr09:18534740..18534764 (25 bp)
ACCGTCTATGGCACGCCATGGTGAT
NONE
OsAffx.6453.1.S1_at--908--10092Chr09:18534941..18534965 (25 bp)
TAGGCGCGCAGCTTGTAGTCCTCCA
NONE
OsAffx.6453.1.S1_at--392--892Chr09:18534965..18534989 (25 bp)
AGGCCGTCGTCCTTCTTGTACTGCA
NONE
OsAffx.6453.1.S1_at--173--8752Chr09:18534981..18535005 (25 bp)
TGTACTGCACGTACGGGCTGGTGTC
NONE
OsAffx.6453.1.S1_at--310--10852Chr09:18535070..18535094 (25 bp)
TTGGTTGCCTCCATTGCAAGTCCTC
NONE
Target Sequence 
TGAACACTATACTACCACAAGAGGCAGCAGCTCACACAGTGAAAACCGAAAAGATGTTACGGTGGTTTATGGTACGAGTG
TAAGTGGCGTGAAATCCACTTGTAGGCTAAAATAAACCGCAAATCCACTTATAAATTAAAATAAGTGGGTTCGCGGCTCA
CCGACCAACACCCATAGTCTACCCACTTACACCGTCTATGGCACGCCATGGTGATTGATGGCGTCGGTGGCGGTGTCAAC
GCGGCCGGTGCCGGCGGCGGCAGCGGCGGTGTCGCCTTGTTGGTGGCGGCGCTGTGTGGCGACGGGGACGGCGGTGCCGG
GGATGGTGGGGGCGTCGGTGCCGCAGCCGCCGTGGGGGACGTCGGAGACGGGGAGGTGGCCGCGGGCGCCGTAGGCGCGC
AGCTTGTAGTCCTCCAGGCCGTCGTCCTTCTTGTACTGCACGTACGGGCTGGTGTCCATCGGCAGCTGCACCGTGTCGCC
GGCGTCCGGCTTCCTCTGCTGCTGCTGCTGCTGGGTCTCCTTGGTTGCCTCCATTGCAAGTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis