Browse Element(s) Details


OsAffx.6468.1.S1_at

Description tigr:9637.m02829
TID=OsAffx.6468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=KH domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g112208/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g218008/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11170Os.52847.1.S1_at9/119+6194158..6195917IBR domain containing protein, expressed
LOC_Os09g11180OsAffx.29801.1.S1_at11/119+6196403..6196831hypothetical protein
LOC_Os09g11190OsAffx.17640.1.S1_at11/119+6204643..6206169hypothetical protein
LOC_Os09g11200OsAffx.6231.1.S1_at11/119+6207946..6208227hypothetical protein
LOC_Os09g11210OsAffx.17641.1.S1_at11/119+6211043..6211517hypothetical protein
LOC_Os09g11220OsAffx.6468.1.S1_at8/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11220OsAffx.6468.1.S1_x_at4/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11230Os.17604.1.S1_at11/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_s_at10/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_at2/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11240Os.7219.1.S1_at11/119+6242180..6244884expressed protein
LOC_Os09g11250Os.24787.1.S1_at8/119+6245257..6248737co-chaperone GrpE family protein, expressed
LOC_Os09g11260OsAffx.29802.1.S1_at10/119+6249839..6250492hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6468.1.S1_at--444--5191NONE
GCAATGCCATGAATGTTCCAAGGAG
NONE
OsAffx.6468.1.S1_at--224--733Chr09:19291037..19291059 (23 bp)
ATGTTCCAAGGAGGACTTTCATTTG
NONE
OsAffx.6468.1.S1_at--721--6173Chr09:19291045..19291069 (25 bp)
GAGGACTTTCATTTGGAACCTTAGA
NONE
OsAffx.6468.1.S1_at--620--3231Chr09:19291054..19291078 (25 bp)
CATTTGGAACCTTAGAATTCCTTTG
NONE
OsAffx.6468.1.S1_at--752--2813Chr09:19291085..19291109 (25 bp)
AAGATTTTCCTGTGGTACTTATGGA
NONE
OsAffx.6468.1.S1_at--1023--6973Chr09:19291099..19291123 (25 bp)
GTACTTATGGAGAGGGATTACTCTA
NONE
OsAffx.6468.1.S1_at--657--6133Chr09:19291110..19291134 (25 bp)
GAGGGATTACTCTAACCAAAGACAA
NONE
OsAffx.6468.1.S1_at--499--5593Chr09:19291130..19291154 (25 bp)
GACAATCTTGCAAAAAGGAAGTGGA
NONE
OsAffx.6468.1.S1_at--438--74Chr09:19291170..19291194 (25 bp)
ATTGCTTTTGTAATTCTAATGAAAC
NONE
OsAffx.6468.1.S1_at--733--2973Chr09:19291187..19291211 (25 bp)
AATGAAACAATACAACACCTCTTTG
NONE
OsAffx.6468.1.S1_at--610--2471Chr09:19291200..19291224 (25 bp)
AACACCTCTTTGTTTATTGTCATTT
NONE
Target Sequence 
GCAATGCCATGAATGTTCCAAGGAGGACTTTCATTTGGAACCTTAGAATTCCTTTGAAAATTAAGATTTTCCTGTGGTAC
TTATGGAGAGGGATTACTCTAACCAAAGACAATCTTGCAAAAAGGAAGTGGAAGGGTAGCATTAAATATTGCTTTTGTAA
TTCTAATGAAACAATACAACACCTCTTTGTTTATTGTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis