Browse Element(s) Details


OsAffx.6472.1.S1_at

Description tigr:9637.m02858
TID=OsAffx.6472.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3259011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g32560OsAffx.30121.1.S1_at11/119+19439400..19440631hypothetical protein
LOC_Os09g32570Os.56234.1.S1_at11/119+19442812..19444429Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32580OsAffx.17986.1.S1_at11/119+19445053..19447503expressed protein
LOC_Os09g32590OsAffx.6472.1.S1_at11/119+19448704..19449267hypothetical protein
LOC_Os09g32600OsAffx.6473.1.S1_at11/119+19454454..19457078F-box domain containing protein
LOC_Os09g32610Os.8515.1.A1_at1/119+19458688..19462253expressed protein
LOC_Os09g32620NANA9+19464287..19465759Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32630OsAffx.30123.1.S1_at11/119+19466227..19466736hypothetical protein
LOC_Os09g32640Os.55534.1.A1_at11/119+19468469..19471212Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32650Os.51218.1.S1_at11/119+19472098..19476734leucyl-tRNA synthetase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6472.1.S1_at--279--7151Chr09:19448767..19448791 (25 bp)
GTCTTCTTCAGCAATGTCGAGCCGC
LOC_Os09g32590
OsAffx.6472.1.S1_at--867--3351Chr09:19448797..19448821 (25 bp)
CACGCGGTGAAGGTGCTCGCCGTTC
LOC_Os09g32590
OsAffx.6472.1.S1_at--891--6091Chr09:19448860..19448884 (25 bp)
GAGTCCGCGTCGTCCGACCATGGGT
LOC_Os09g32590
OsAffx.6472.1.S1_at--336--791Chr09:19448879..19448903 (25 bp)
ATGGGTGTAAGATCGTCGGCCTCCG
LOC_Os09g32590
OsAffx.6472.1.S1_at--907--7511Chr09:19448908..19448932 (25 bp)
GTGGAGAACCTGTCCAAGCTCGACG
LOC_Os09g32590
OsAffx.6472.1.S1_at--493--1151Chr09:19449074..19449098 (25 bp)
AGTCGAAGGCGCTAGCGCTGGTTCT
LOC_Os09g32590
OsAffx.6472.1.S1_at--707--8571Chr09:19449092..19449116 (25 bp)
TGGTTCTCCGGCGACATGTCAGCCA
LOC_Os09g32590
OsAffx.6472.1.S1_at--990--751Chr09:19449107..19449131 (25 bp)
ATGTCAGCCATGTCTTCAAGGGAAC
LOC_Os09g32590
OsAffx.6472.1.S1_at--509--7011Chr09:19449118..19449142 (25 bp)
GTCTTCAAGGGAACCCGCGGCGATG
LOC_Os09g32590
OsAffx.6472.1.S1_at--390--8371Chr09:19449136..19449160 (25 bp)
GGCGATGGTTGGCTCCTCAAAAACC
LOC_Os09g32590
OsAffx.6472.1.S1_at--676--6611Chr09:19449143..19449167 (25 bp)
GTTGGCTCCTCAAAAACCTGCAGGC
LOC_Os09g32590
Target Sequence 
GTCTTCTTCAGCAATGTCGAGCCGCACCCGCACGCGGTGAAGGTGCTCGCCGTTCGCGAGCTCAAGCACGCGCCCGCGCT
CCTCCACCTTCTCGAGTCCGCGTCGTCCGACCATGGGTGTAAGATCGTCGGCCTCCGCCTCGTGGAGAACCTGTCCAAGC
TCGACGCCCTCCTCGCCGTCGTGAGCGAGGGTGTCATCCCGCTCCTCCTCAACGACCTCCGCGACCCAGACGCCAACCGG
GAGCTTCGCCGCTGCGCCCAGAGCATCCACCGCGTCGGCCGCCTCATCGGAGGCTACGCGCGCCGCAAGTCGAAGGCGCT
AGCGCTGGTTCTCCGGCGACATGTCAGCCATGTCTTCAAGGGAACCCGCGGCGATGGTTGGCTCCTCAAAAACCTGCAGG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis