Browse Element(s) Details


OsAffx.6501.1.S1_x_at

Description tigr:9637.m03142
TID=OsAffx.6501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF029349 ornithine decarboxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3712011/11Ornithine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37080Os.53581.1.S1_at11/119+21385537..21386617expressed protein
LOC_Os09g37090OsAffx.30163.1.S1_at11/119+21389834..21390046hypothetical protein
LOC_Os09g37100Os.11408.1.S2_at11/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37100Os.11408.1.S1_at10/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37110OsAffx.30164.1.S1_at11/119+21398391..21401460hypothetical protein
LOC_Os09g37120OsAffx.6501.1.S1_x_at11/119+21408790..21410016Ornithine decarboxylase, putative, expressed
LOC_Os09g37120OsAffx.13673.1.S1_x_at1/119+21408790..21410016Ornithine decarboxylase, putative, expressed
LOC_Os09g37130OsAffx.2382.1.S1_x_at1/119+21417852..21418253hypothetical protein
LOC_Os09g37140NANA9+21423784..21425085hypothetical protein
LOC_Os09g37150NANA9+21429663..21432262hypothetical protein
LOC_Os09g37160Os.31312.2.S1_x_at5/119+21433408..21436663retrotransposon protein, putative, unclassified
LOC_Os09g37160Os.31312.5.S1_x_at4/119+21433408..21436663retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009089biological_processlysine biosynthesis via diaminopimelate
GO:0008836molecular_functiondiaminopimelate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6501.1.S1_x_at--1146--851Chr09:21409254..21409278 (25 bp)
ATGGCCGGCCGGACCTTCGACGAGG
LOC_Os09g37120
OsAffx.6501.1.S1_x_at--958--3931Chr09:21409226..21409250 (25 bp)
CGGCGGTCATCAACCGCGCGCTGGA
LOC_Os09g37120
OsAffx.6501.1.S1_x_at--796--5832Chr09:21409188..21409212 (25 bp)
GACCTCCCCTGCGTCGAGGTGATCG
LOC_Os09g37120
OsAffx.6501.1.S1_x_at--857--4072Chr09:21409090..21409114 (25 bp)
CGAGCTCCGGGAGTACTGGATCGAC
LOC_Os09g37120
OsAffx.6501.1.S1_x_at--784--9711Chr09:21409046..21409070 (25 bp)
TCAACTGCATCCTCATGGACCACTA
LOC_Os09g37120
OsAffx.6501.1.S1_x_at--995--1971Chr09:21409043..21409067 (25 bp)
ACTGCATCCTCATGGACCACTACGT
LOC_Os09g37120
OsAffx.6501.1.S1_x_at--191--9251Chr09:21409037..21409061 (25 bp)
TCCTCATGGACCACTACGTGCCGCG
LOC_Os09g37120
OsAffx.6501.1.S1_x_at--204--1911Chr09:21408933..21408957 (25 bp)
ACGTGCGACTCCCTCGACACGGTGG
LOC_Os09g37120
OsAffx.6501.1.S1_x_at--947--8591Chr09:21408911..21408935 (25 bp)
TGGTCACCGGCTACCAGCTGCCGGA
LOC_Os09g37120
OsAffx.6501.1.S1_x_at--101--8351Chr09:21408832..21408856 (25 bp)
GGCTGGCTCCAACTTCAACGGCTTC
LOC_Os09g37120
OsAffx.6501.1.S1_x_at--1062--2511Chr09:21408822..21408846 (25 bp)
AACTTCAACGGCTTCGCCACGTCAG
LOC_Os09g37120
Target Sequence 
ATGGCCGGCCGGACCTTCGACGAGGCGGCGGCGGTCATCAACCGCGCGCTGGAGCGCCACTTCGGCGACCTCCCCTGCGT
CGAGGTGATCGGCGAGCCCGGGCGGTACTTCGCCGAGACGGCGTTCACCCTCGCCGCGCGCGTCATCGGGAAGCGCACCC
GCGGCGAGCTCCGGGAGTACTGGATCGACGACGGCCTCTACGGCTCCCTCAACTGCATCCTCATGGACCACTACGTGCCG
CGCCCGAGGCCGCTCGCCGCCGCCGCCGCCGGCGAGGACACGACGGCGGCGACGACGCACGCCTCGACGGTGTTCGGCCC
GACGTGCGACTCCCTCGACACGGTGGTCACCGGCTACCAGCTGCCGGAGATGAGCGTCGGCGACTGGCTCGTGTTCGACG
ACATGGGCGCCTACACCACCGCGGCTGGCTCCAACTTCAACGGCTTCGCCACGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6501.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis