Browse Element(s) Details


OsAffx.6558.1.S1_at

Description gb:NM_194611.1
DB_XREF= gi:37530581
TID=OsAffx.6558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0023I19.9), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0274010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02680Os.46880.1.S1_at10/1110+1037828..1038287hypothetical protein
LOC_Os10g02690OsAffx.18093.1.S1_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_s_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_at1/1110+1038976..1040777hypothetical protein
LOC_Os10g02700NANA10+1041615..1043792retrotransposon protein, putative, unclassified
LOC_Os10g02710OsAffx.20791.1.S1_at11/1110+1045167..1046615hypothetical protein
LOC_Os10g02720OsAffx.8557.1.S1_at11/1110+1051225..1054386Protein kinase domain containing protein
LOC_Os10g02740OsAffx.6558.1.S1_s_at11/1110+1061959..1064246hypothetical protein
LOC_Os10g02740OsAffx.6558.1.S1_at10/1110+1061959..1064246hypothetical protein
LOC_Os10g02750Os.11391.1.S1_at11/1110+1067094..1069131Acid phosphatase, putative, expressed
LOC_Os10g02760Os.26648.1.S1_at11/1110+1069316..1073690hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g02770Os.10574.1.S1_at10/1110+1076943..1081099Glycosyl hydrolases family 16 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6558.1.S1_at--1086--2811Chr10:1061998..1062022 (25 bp)
AAGTTGACTAAGTTCTGGAATCCAA
LOC_Os10g02740
OsAffx.6558.1.S1_at--353--6891Chr10:1062068..1062092 (25 bp)
GTATACGAGCTATGTTTTCGGTCCG
LOC_Os10g02740
OsAffx.6558.1.S1_at--1151--1851Chr10:1062072..1062092 (21 bp)
ACGAGCTATGTTTTCGGTCCGAATA
LOC_Os10g02740
OsAffx.6558.1.S1_at--1100--10391NONE
TTCGGTCCGAATAAGGGTGACAACT
NONE
OsAffx.6558.1.S1_at--516--2891Chr10:1062626..1062650 (25 bp)
AAGGGTGACAACTTCTTGTAACGTG
LOC_Os10g02740
OsAffx.6558.1.S1_at--399--2211Chr10:1062633..1062657 (25 bp)
ACAACTTCTTGTAACGTGACGAGCA
LOC_Os10g02740
OsAffx.6558.1.S1_at--620--7051Chr10:1062643..1062667 (25 bp)
GTAACGTGACGAGCAAAGCCTCCAT
LOC_Os10g02740
OsAffx.6558.1.S1_at--548--1911Chr10:1062646..1062670 (25 bp)
ACGTGACGAGCAAAGCCTCCATTTG
LOC_Os10g02740
OsAffx.6558.1.S1_at--902--4071Chr10:1062652..1062676 (25 bp)
CGAGCAAAGCCTCCATTTGCTCTAT
LOC_Os10g02740
OsAffx.6558.1.S1_at--1150--4311Chr10:1062664..1062688 (25 bp)
CCATTTGCTCTATTGCAATTGTTGA
LOC_Os10g02740
OsAffx.6558.1.S1_at--152--3691Chr10:1062673..1062696 (24 bp)
CTATTGCAATTGTTGAGAGGCGAGA
LOC_Os10g02740
Target Sequence 
AAGTTGACTAAGTTCTGGAATCCAATTCAGCCACCTGCTACCGTGCTGAATTTAAATGGCCGCCAAATCTGTATACGAGC
TATGTTTTCGGTCCGAATAAGGGTGACAACTTCTTGTAACGTGACGAGCAAAGCCTCCATTTGCTCTATTGCAATTGTTG
AGAGGCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis