Browse Element(s) Details


OsAffx.6583.1.S1_at

Description tigr:9638.m00470
TID=OsAffx.6583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0558011/11hypothetical protein
LOC_Os04g306801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05540Os.46894.1.S1_at11/1110+2727508..2732550F-box domain containing protein, expressed
LOC_Os10g05550NANA10+2736672..2737287hypothetical protein
LOC_Os10g05560OsAffx.30302.1.S1_at10/1110+2744761..2746068hypothetical protein
LOC_Os10g05560Os.5212.1.S1_at1/1110+2744761..2746068hypothetical protein
LOC_Os10g05570NANA10+2747754..2748620leucine-rich repeat family protein, putative
LOC_Os10g05580OsAffx.6583.1.S1_at11/1110+2757183..2758690hypothetical protein
LOC_Os10g05590OsAffx.20749.1.S1_at11/1110+2764618..2767273F-box domain containing protein
LOC_Os10g05600Os.56354.1.S1_at10/1110+2778783..2780822Thaumatin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6583.1.S1_at--1033--3891Chr10:2758086..2758110 (25 bp)
CTGGGCGGCATCAAGGATCCTCATG
LOC_Os10g05580
OsAffx.6583.1.S1_at--827--1671Chr10:2758141..2758165 (25 bp)
AGCCGAGTGCAAGAGAGCCCAGCCA
LOC_Os10g05580
OsAffx.6583.1.S1_at--1025--1371Chr10:2758154..2758178 (25 bp)
AGAGCCCAGCCAAGATCCAGAGCGA
LOC_Os10g05580
OsAffx.6583.1.S1_at--940--3911Chr10:2758242..2758266 (25 bp)
CTGGCACAGGGCAGCAGTCGTCATC
LOC_Os10g05580
OsAffx.6583.1.S1_at--207--9411Chr10:2758265..2758289 (25 bp)
TCGTCATCGCTGTCAGGGTCGAGAT
LOC_Os10g05580
OsAffx.6583.1.S1_at--229--5911Chr10:2758351..2758375 (25 bp)
GAGCTCCGTAGTTGCTGTCGATGCT
LOC_Os10g05580
OsAffx.6583.1.S1_at--255--8551Chr10:2758402..2758426 (25 bp)
TGGAGCAGTTGCTGTCGACGTCGTC
LOC_Os10g05580
OsAffx.6583.1.S1_at--620--5751Chr10:2758418..2758442 (25 bp)
GACGTCGTCGTTCTAGTGCCGGAAA
LOC_Os10g05580
OsAffx.6583.1.S1_at--950--10111Chr10:2758569..2758593 (25 bp)
TATGTCGATCGCTTCTTGGACGAGA
LOC_Os10g05580
OsAffx.6583.1.S1_at--650--1371Chr10:2758620..2758644 (25 bp)
AGAGCTCCGGCAAGTGCATTGGTGA
LOC_Os10g05580
OsAffx.6583.1.S1_at--1136--4932Chr10:2758635..2758659 (25 bp)
GCATTGGTGAGTCCGCTGCTTCCTT
LOC_Os10g05580
Target Sequence 
CTGGGCGGCATCAAGGATCCTCATGCGACGCCTTCGCGGCTAGCTCCTCCGACCCAGCCGAGTGCAAGAGAGCCCAGCCA
AGATCCAGAGCGACGACATGGACCTTGTGCGTGTGGTGCGCGGATCCGCTCCGCGACGATGGCTCACAGCCTCGTACTGG
CACAGGGCAGCAGTCGTCATCGTCATCGCTGTCAGGGTCGAGATTCGGGGGCGGGGACAAGAGCTCGCCGAACTCGAGCT
CCGTAGTTGCTGTCGATGCTGTCGTCCATGGCGTTGGCGAATGGGGTGGAGCAGTTGCTGTCGACGTCGTCGTTCTAGTG
CCGGAAAGGGTGGCCGGGATGGGCATGCGACCGGGGGGAAGGATGACGTGGATGCAGTCCAACGCGCAGGTGGGGCTCCG
CGACCTCCACTTCCTCGACAAGACGTCCGGCCGGCAGGAAGGAGGGATCGAAGTATGTCGATCGCTTCTTGGACGAGATG
AACCGCAACGGCCGCCTCCCAAGGAGAGCTCCGGCAAGTGCATTGGTGAGTCCGCTGCTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis