Browse Element(s) Details


OsAffx.6603.1.S1_at

Description tigr:9638.m00708
TID=OsAffx.6603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g084006/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08390OsAffx.22947.1.S1_x_at2/1110+4319492..4323964retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08390OsAffx.22947.5.S1_x_at1/1110+4319492..4323964retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08390OsAffx.22947.3.S1_x_at1/1110+4319492..4323964retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08390OsAffx.22947.2.S1_x_at1/1110+4319492..4323964retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08400OsAffx.6603.1.S1_at6/1110+4328623..4330073hypothetical protein
LOC_Os10g08410NANA10+4335216..4336940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08420OsAffx.31892.2.S1_at2/1110+4338863..4342140retrotransposon protein, putative, unclassified
LOC_Os10g08420OsAffx.31892.2.S1_x_at1/1110+4338863..4342140retrotransposon protein, putative, unclassified
LOC_Os10g08430OsAffx.30337.1.S1_at11/1110+4347105..4347566hypothetical protein
LOC_Os10g08440OsAffx.18172.1.S1_x_at11/1110+4350122..4350574hypothetical protein
LOC_Os10g08440OsAffx.18172.2.S1_at11/1110+4350122..4350574hypothetical protein
LOC_Os10g08440OsAffx.18172.1.S1_at9/1110+4350122..4350574hypothetical protein
LOC_Os10g08450OsAffx.8461.1.S1_at11/1110+4354817..4358316transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6603.1.S1_at--445--5091NONE
GCACGCGGCGCGGATGTTACATTTA
NONE
OsAffx.6603.1.S1_at--889--3351NONE
CACGCGGCGCGGATGTTACATTTAT
NONE
OsAffx.6603.1.S1_at--646--1831NONE
ACGCGGCGCGGATGTTACATTTATC
NONE
OsAffx.6603.1.S1_at--1133--4131NONE
CGCGGCGCGGATGTTACATTTATCT
NONE
OsAffx.6603.1.S1_at--1066--4691NONE
GCGGCGCGGATGTTACATTTATCTC
NONE
OsAffx.6603.1.S1_at--1016--8391Chr10:4328660..4328679 (20 bp)
GGCGCGGATGTTACATTTATCTCAC
LOC_Os10g08400
OsAffx.6603.1.S1_at--386--4571Chr10:4328659..4328679 (21 bp)
GCGCGGATGTTACATTTATCTCACT
LOC_Os10g08400
OsAffx.6603.1.S1_at--61--4691Chr10:4328657..4328679 (23 bp)
GCGGATGTTACATTTATCTCACTCG
LOC_Os10g08400
OsAffx.6603.1.S1_at--716--7991Chr10:4328655..4328679 (25 bp)
GGATGTTACATTTATCTCACTCGTA
LOC_Os10g08400
OsAffx.6603.1.S1_at--1154--6271Chr10:4328654..4328678 (25 bp)
GATGTTACATTTATCTCACTCGTAT
LOC_Os10g08400
OsAffx.6603.1.S1_at--1074--731Chr10:4328653..4328677 (25 bp)
ATGTTACATTTATCTCACTCGTATG
LOC_Os10g08400
Target Sequence 
GCACGCGGCGCGGATGTTACATTTATCTCACTCGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis