Browse Element(s) Details


OsAffx.6684.1.S1_at

Description tigr:9638.m01457
TID=OsAffx.6684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1764011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17600OsAffx.6683.1.S1_at11/1110+8560702..8562492hypothetical protein
LOC_Os10g17610Os.45212.1.S1_x_at10/1110+8564391..8570345retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17620OsAffx.25156.1.S1_x_at11/1110+8571616..8574308hypothetical protein
LOC_Os10g17620OsAffx.25156.4.S1_x_at3/1110+8571616..8574308hypothetical protein
LOC_Os10g17620OsAffx.25156.5.S1_x_at3/1110+8571616..8574308hypothetical protein
LOC_Os10g17630Os.49402.1.S1_at10/1110+8576763..8579068B3 DNA binding domain containing protein, expressed
LOC_Os10g17640OsAffx.6684.1.S1_at11/1110+8585708..8585996hypothetical protein
LOC_Os10g17650Os.46489.1.S1_at11/1110+8588927..8594834Glycosyl hydrolase family 1 protein, expressed
LOC_Os10g17660Os.12777.1.S1_a_at11/1110+8596569..8597679Profilin A, putative, expressed
LOC_Os10g17670OsAffx.8300.1.S1_at11/1110+8603911..8605502hypothetical protein
LOC_Os10g17680Os.12777.1.S1_a_at11/1110+8605864..8606978Profilin A, putative, expressed
LOC_Os10g17690OsAffx.20544.1.S1_x_at11/1110+8608595..8611179NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6684.1.S1_at--976--10631Chr10:8585942..8585966 (25 bp)
TTCGCTCTGGCATCGTTGGAGGTCC
LOC_Os10g17640
OsAffx.6684.1.S1_at--458--10811Chr10:8585927..8585951 (25 bp)
TTGGAGGTCCTTCAGCTTTTGAGAG
LOC_Os10g17640
OsAffx.6684.1.S1_at--913--7771Chr10:8585922..8585946 (25 bp)
GGTCCTTCAGCTTTTGAGAGTCATG
LOC_Os10g17640
OsAffx.6684.1.S1_at--797--10251Chr10:8585910..8585934 (25 bp)
TTTGAGAGTCATGGGCAAAAGCCCT
LOC_Os10g17640
OsAffx.6684.1.S1_at--493--8231Chr10:8585897..8585921 (25 bp)
GGCAAAAGCCCTGCATGGCCTTTAT
LOC_Os10g17640
OsAffx.6684.1.S1_at--788--8431Chr10:8585881..8585905 (25 bp)
GGCCTTTATCCATGACTAGCGACAT
LOC_Os10g17640
OsAffx.6684.1.S1_at--562--9991Chr10:8585865..8585889 (25 bp)
TAGCGACATCGATGCCTGCGGGTGC
LOC_Os10g17640
OsAffx.6684.1.S1_at--1144--6951Chr10:8585808..8585863 (25 bp)
GTCTCCTTCTTGAAGGTGAAAACCA
LOC_Os10g17640
OsAffx.6684.1.S1_at--895--10852Chr05:6275882..6275907 (25 bp)
TTGGCAGCGGCATTGTCGTTGCTTC
NONE
OsAffx.6684.1.S1_at--709--9391Chr10:8585748..8585772 (25 bp)
TCGTTGCTTCCATCCTTGGAGGATA
LOC_Os10g17640
OsAffx.6684.1.S1_at--961--3531Chr10:8585738..8585762 (25 bp)
CATCCTTGGAGGATATGGCTTGAAG
LOC_Os10g17640
Target Sequence 
TTCGCTCTGGCATCGTTGGAGGTCCTTCAGCTTTTGAGAGTCATGGGCAAAAGCCCTGCATGGCCTTTATCCATGACTAG
CGACATCGATGCCTGCGGGTGCCGTCTCCTTCTTGAAGGTGAAAACCAAGTCAAGTTTTGGATGGGTGTTGGCAGCGGCA
TTGTCGTTGCTTCCATCCTTGGAGGATATGGCTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis