Browse Element(s) Details


OsAffx.6736.1.S1_x_at

Description tigr:9638.m01922
TID=OsAffx.6736.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2271011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22650Os.28943.1.S1_x_at1/1110+11440409..11443587transposon protein, putative, unclassified
LOC_Os10g22660OsAffx.20435.1.S1_at11/1110+11447754..11448221hypothetical protein
LOC_Os10g22670OsAffx.30501.1.S1_at10/1110+11448576..11449285hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_x_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.22642.1.S1_x_at1/1110+11451129..11451915hypothetical protein
LOC_Os10g22690Os.52765.1.S1_at4/1110+11453165..11455525hypothetical protein
LOC_Os10g22700OsAffx.20433.1.S1_x_at11/1110+11460867..11461716expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_x_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.28845.1.S1_x_at1/1110+11464845..11466882expressed protein
LOC_Os10g22720OsAffx.30503.1.S1_at11/1110+11469998..11473960hypothetical protein
LOC_Os10g22730Os.7322.1.S1_at11/1110+11475856..11481847expressed protein
LOC_Os10g22730Os.52023.1.S1_at10/1110+11475856..11481847expressed protein
LOC_Os10g22740OsAffx.8205.1.S1_at11/1110+11491121..11492666hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6736.1.S1_x_at--836--4551Chr10:11465389..11465413 (25 bp)
GCGCGGCCGGAGACACCAAGAACGA
LOC_Os10g22710
OsAffx.6736.1.S1_x_at--226--1711Chr10:11465375..11465399 (25 bp)
ACCAAGAACGACAAGGCGCTGCTGC
LOC_Os10g22710
OsAffx.6736.1.S1_x_at--483--4011Chr10:11465314..11465338 (25 bp)
CGTCCTCCAAGAACGCGAACATGTT
LOC_Os10g22710
OsAffx.6736.1.S1_x_at--303--4011Chr10:11465245..11465269 (25 bp)
CCAACGGGAAGGAGAAGTCGCTGTC
LOC_Os10g22710
OsAffx.6736.1.S1_x_at--269--9311Chr10:11465203..11465227 (25 bp)
TCCCCGCGCGCGAGGAAAGCAGAGG
LOC_Os10g22710
OsAffx.6736.1.S1_x_at--939--7711Chr10:11465135..11465159 (25 bp)
GGGTGGAGCTCGAGCAGCACCTTCT
LOC_Os10g22710
OsAffx.6736.1.S1_x_at--663--3791Chr10:11465127..11465151 (25 bp)
CTCGAGCAGCACCTTCTTGCGCGGG
LOC_Os10g22710
OsAffx.6736.1.S1_x_at--1092--10551Chr10:11465075..11465099 (25 bp)
TTCTTGCCGGCGTCGCAGGGCGCGG
LOC_Os10g22710
OsAffx.6736.1.S1_x_at--825--7331Chr10:11464900..11464924 (25 bp)
GTGCAGCGCACGAGTTCTTGGATTC
LOC_Os10g22710
OsAffx.6736.1.S1_x_at--427--1651Chr10:11464896..11464920 (25 bp)
AGCGCACGAGTTCTTGGATTCTTGG
LOC_Os10g22710
OsAffx.6736.1.S1_x_at--907--10551Chr10:11464886..11464910 (25 bp)
TTCTTGGATTCTTGGGTTGAGCTGG
LOC_Os10g22710
Target Sequence 
GCGCGGCCGGAGACACCAAGAACGACAAGGCGCTGCTGCCGCTGGACCCCGTCGGCGTCGTCGGCGCCCTCGGCGCGTCC
TCCAAGAACGCGAACATGTTCCCACCCCCGCCGCCGCCGCCGCCGCCCCCTGTCCCGCCCACCGCCAACGGGAAGGAGAA
GTCGCTGTCGGGGCAAGAACCCCGCGTCCCCGCGCGCGAGGAAAGCAGAGGCGGAGCGGTGGCCGGGGAGGGCGTCGGGG
TCGGGGAGCCGAAGGGGTGGAGCTCGAGCAGCACCTTCTTGCGCGGGGACGAGGGCGGGAGGAGGCACCGCCGCTTCTTG
CCGGCGTCGCAGGGCGCGGAGAAGGCGACCGCGGAGTGCGCGCGCTCGATGCGGAGCTCGGCGAGGTGGTGGCGCGGCGT
CGTCGGCGTCGTCGCCGGCGAGCCGAAGGAGGGGAGCAGGTGGGGGAGCGGCGCCGCCTCCGTCGCCATGGCCGTGGCGT
GGCGCGCGCGTGCAGCGCACGAGTTCTTGGATTCTTGGGTTGAGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6736.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis