Browse Element(s) Details


OsAffx.6826.1.S1_at

Description tigr:9638.m02661
TID=OsAffx.6826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3090011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30860Os.17895.1.S1_a_at11/1110+15763382..15767033expressed protein
LOC_Os10g30860Os.17895.2.S1_x_at10/1110+15763382..15767033expressed protein
LOC_Os10g30870Os.18850.1.S1_at11/1110+15767192..15769159expressed protein
LOC_Os10g30870OsAffx.27220.1.S1_at1/1110+15767192..15769159expressed protein
LOC_Os10g30880Os.30124.1.S1_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.30124.1.S1_x_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.56086.1.S1_at1/1110+15776905..15777987expressed protein
LOC_Os10g30890Os.14361.1.S1_at10/1110+15780621..15782714expressed protein
LOC_Os10g30900OsAffx.6826.1.S1_at11/1110+15785551..15785936hypothetical protein
LOC_Os10g30910Os.6001.1.S1_at11/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30910Os.6001.2.S1_at1/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30930NANA10+15805796..15806734retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6826.1.S1_at--697--1671Chr10:15785715..15785739 (25 bp)
AGCCGTCTCATCGATCATAACGTAA
LOC_Os10g30900
OsAffx.6826.1.S1_at--97--2151Chr10:15785684..15785708 (25 bp)
ACAGAATAGCAGTTCGATGTGCGCA
LOC_Os10g30900
OsAffx.6826.1.S1_at--1004--1511Chr10:15785677..15785701 (25 bp)
AGCAGTTCGATGTGCGCAGACGACA
LOC_Os10g30900
OsAffx.6826.1.S1_at--653--771Chr10:15785668..15785692 (25 bp)
ATGTGCGCAGACGACAGAACCTCCG
LOC_Os10g30900
OsAffx.6826.1.S1_at--685--1851Chr10:15785658..15785682 (25 bp)
ACGACAGAACCTCCGCTGCTGGCAG
LOC_Os10g30900
OsAffx.6826.1.S1_at--753--3831Chr10:15785643..15785667 (25 bp)
CTGCTGGCAGCCTCGGAGTCGCAGA
LOC_Os10g30900
OsAffx.6826.1.S1_at--172--9451Chr10:15785631..15785655 (25 bp)
TCGGAGTCGCAGAACACACAACAGT
LOC_Os10g30900
OsAffx.6826.1.S1_at--242--7231Chr10:15785626..15785650 (25 bp)
GTCGCAGAACACACAACAGTACAAC
LOC_Os10g30900
OsAffx.6826.1.S1_at--477--2511Chr10:15785604..15785628 (25 bp)
AACATCACTGTTGCTGTTTGGCACA
LOC_Os10g30900
OsAffx.6826.1.S1_at--1053--9671Chr10:15785600..15785624 (25 bp)
TCACTGTTGCTGTTTGGCACAATGG
LOC_Os10g30900
OsAffx.6826.1.S1_at--1131--8231Chr10:15785585..15785609 (25 bp)
GGCACAATGGTAGAGCAATGACAAA
LOC_Os10g30900
Target Sequence 
AGCCGTCTCATCGATCATAACGTAAAAAGAAACAGAATAGCAGTTCGATGTGCGCAGACGACAGAACCTCCGCTGCTGGC
AGCCTCGGAGTCGCAGAACACACAACAGTACAACATCACTGTTGCTGTTTGGCACAATGGTAGAGCAATGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis