Browse Element(s) Details


Os.14361.1.S1_at

Description gb:AK069924.1
DB_XREF= gi:32979948
TID=Os.14361.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0094K20.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035J22, full insert sequence.
FL= gb:AK069924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3089010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30850Os.9393.1.S1_a_at10/1110+15755079..15757298RNA-binding protein, putative, expressed
LOC_Os10g30860Os.17895.1.S1_a_at11/1110+15763382..15767033expressed protein
LOC_Os10g30860Os.17895.2.S1_x_at10/1110+15763382..15767033expressed protein
LOC_Os10g30870Os.18850.1.S1_at11/1110+15767192..15769159expressed protein
LOC_Os10g30870OsAffx.27220.1.S1_at1/1110+15767192..15769159expressed protein
LOC_Os10g30880Os.30124.1.S1_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.30124.1.S1_x_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.56086.1.S1_at1/1110+15776905..15777987expressed protein
LOC_Os10g30890Os.14361.1.S1_at10/1110+15780621..15782714expressed protein
LOC_Os10g30900OsAffx.6826.1.S1_at11/1110+15785551..15785936hypothetical protein
LOC_Os10g30910Os.6001.1.S1_at11/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30910Os.6001.2.S1_at1/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30930NANA10+15805796..15806734retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14361.1.S1_at--1092--7791Chr10:15781144..15781168 (25 bp)
GGTCGCCGGAGATTGCTGATCCTCA
LOC_Os10g30890
Os.14361.1.S1_at--420--3871Chr10:15781129..15781153 (25 bp)
CTGATCCTCATCCTAGTGCAGGTAA
LOC_Os10g30890
Os.14361.1.S1_at--1161--8971Chr10:15781113..15781137 (25 bp)
TGCAGGTAACAAATCCAGGAGCGGT
LOC_Os10g30890
Os.14361.1.S1_at--907--8611Chr10:15781086..15781110 (25 bp)
TGGTGATGACGCTACTACTACTACT
LOC_Os10g30890
Os.14361.1.S1_at--1045--9891Chr10:15781068..15781092 (25 bp)
TACTACTGATCGTCAGACGACGCTG
LOC_Os10g30890
Os.14361.1.S1_at--981--8491Chr10:15781024..15781048 (25 bp)
TGGCAGCTCGGGATGATTTCTCCAG
LOC_Os10g30890
Os.14361.1.S1_at--181--6971Chr10:15780664..15780688 (25 bp)
GTAGCCTTTTTGGTTGTTCGAATGC
LOC_Os10g30890
Os.14361.1.S1_at--504--10791Chr10:15780651..15780675 (25 bp)
TTGTTCGAATGCCTTATGTCACCCC
LOC_Os10g30890
Os.14361.1.S1_at--993--10031Chr10:15780637..15780661 (25 bp)
TATGTCACCCCGTTGAGGTTTCCGC
LOC_Os10g30890
Os.14361.1.S1_at--768--6151Chr10:15780623..15780647 (25 bp)
GAGGTTTCCGCTTGAGATGCAGCAG
LOC_Os10g30890
Os.14361.1.S1_at--616--6331Chr10:15780608..15780632 (25 bp)
GATGCAGCAGGAATTTTCCCTCGTT
NONE
Target Sequence 
GGTCGCCGGAGATTGCTGATCCTCATCCTAGTGCAGGTAACAAATCCAGGAGCGGTAATGGTGATGACGCTACTACTACT
ACTGATCGTCAGACGACGCTGGCGTCGACGACGACTGCGGTGGCAGCTCGGGATGATTTCTCCAGCTCCGACGACGACGA
CGACGACATCGCCGGGATAGCAGGCGGCGACGAGGAGAGCAGCGACGACGCGGCGCGGATCGGCAGGCTCCGAGCCGGCA
TCAACGGTGACGCTAGGANAGAATAAGAGNCCAGCAGGCTCGGAAGAGGTGGNAGGAAGCCCGTGAAGGCACGGTCGCTC
NAATCCTTGATGTGNAGCAAATTAAAGCATAGTGCTAGAGGNGAAGAATTGAAAGCTAGAAGNAAGAAGAAGATGATGAT
GATGATGCTTAGCTAAGNGCTCAGGGTTAGCTTAGCTTAGCTTAGTTCGCCATNNTTATACAAACTGTTCGATCGACACN
GTGTTTTGTAGCCTTTTTGGTTGTTCGAATGCCTTATGTCACCCCGTTGAGGTTTCCGCTTGAGATGCAGCAGGAATTTT
CCCTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis