Browse Element(s) Details


Os.30124.1.S1_x_at

Description gb:BP184591
DB_XREF= gi:32948019
DB_XREF=BP184591
TID=Os.30124.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0094K20.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3088011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30850Os.9393.1.S1_a_at10/1110+15755079..15757298RNA-binding protein, putative, expressed
LOC_Os10g30860Os.17895.1.S1_a_at11/1110+15763382..15767033expressed protein
LOC_Os10g30860Os.17895.2.S1_x_at10/1110+15763382..15767033expressed protein
LOC_Os10g30870Os.18850.1.S1_at11/1110+15767192..15769159expressed protein
LOC_Os10g30870OsAffx.27220.1.S1_at1/1110+15767192..15769159expressed protein
LOC_Os10g30880Os.30124.1.S1_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.30124.1.S1_x_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.56086.1.S1_at1/1110+15776905..15777987expressed protein
LOC_Os10g30890Os.14361.1.S1_at10/1110+15780621..15782714expressed protein
LOC_Os10g30900OsAffx.6826.1.S1_at11/1110+15785551..15785936hypothetical protein
LOC_Os10g30910Os.6001.1.S1_at11/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30910Os.6001.2.S1_at1/1110+15791881..15801528transmembrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30124.1.S1_x_at--612--7671Chr10:15777460..15777484 (25 bp)
GGGTACGTGTTCTGCGACCGGCACA
LOC_Os10g30880
Os.30124.1.S1_x_at--595--4591Chr10:15777504..15777528 (25 bp)
GCGCAAGCCCAGGAAGAGGAGCCAC
LOC_Os10g30880
Os.30124.1.S1_x_at--410--1331Chr10:15777518..15777542 (25 bp)
AGAGGAGCCACTCCAGCATCGTGGA
LOC_Os10g30880
Os.30124.1.S1_x_at--594--5771Chr10:15777664..15777688 (25 bp)
GACGAGGAGTTCCACTACTACGGCG
LOC_Os10g30880
Os.30124.1.S1_x_at--1002--9891Chr10:15777679..15777703 (25 bp)
TACTACGGCGGGTTACAGCACGGCG
LOC_Os10g30880
Os.30124.1.S1_x_at--1109--4691Chr10:15777767..15777791 (25 bp)
GCGGCTACGTCATTGATTCTTCGCA
LOC_Os10g30880
Os.30124.1.S1_x_at--955--111Chr10:15777782..15777806 (25 bp)
ATTCTTCGCACCAGCGTTTGCATTG
LOC_Os10g30880
Os.30124.1.S1_x_at--634--6851Chr10:15777797..15777821 (25 bp)
GTTTGCATTGCGTTGCGTCGATCGA
LOC_Os10g30880
Os.30124.1.S1_x_at--252--6391Chr10:15777820..15777844 (25 bp)
GATCGATCACACACTACGGTTTCAG
LOC_Os10g30880
Os.30124.1.S1_x_at--356--6831Chr10:15777838..15777862 (25 bp)
GTTTCAGAGTAGCAGAGCTCACTGT
LOC_Os10g30880
Os.30124.1.S1_x_at--3--6951Chr10:15777861..15777885 (25 bp)
GTAGCTAACCCCAGACAAATTCAGA
LOC_Os10g30880
Target Sequence 
GGGTACGTGTTCTGCGACCGGCACATCGCGTGGTCCACACGCAAGCGCAAGCCCAGGAAGAGGAGCCACTCCAGCATCGT
GGACCCGCCGCAGCCAAAGGAAGATCCCGCCGCCGCGGCAAAGGCAGAGGACGACGACGGCGTGGAGGAAGAGGAGGAGT
CCAAGAACCACGGCGCTAACCTCCGGTGCAACGACGACGACGACGACGAGGAGTTCCACTACTACGGCGGGTTACAGCAC
GGCGGCAGGAAGCGGGCGAAGANCGGCGGCGGCGGCGGGCCGGCGTGAAAGCTCTGCTTCCCCGCCGGCGGCTACGTCAT
TGATTCTTCGCACCAGCGTTTGCATTGCGTTGCGTCGATCGATCGATCACACACTACGGTTTCAGAGTAGCAGAGCTCAC
TGTAGCTAACCCCAGACAAATTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30124.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis