Browse Element(s) Details


Os.9393.1.S1_a_at

Description gb:AK067013.1
DB_XREF= gi:32977031
TID=Os.9393.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative AP2-domain DNA-binding protein (OSJNBa0094K20.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093E22, full insert sequence.
FL= gb:AK067013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3085010/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30840NANA10+15734459..15734833AP2 domain containing protein
LOC_Os10g30850Os.9393.1.S1_a_at10/1110+15755079..15757298RNA-binding protein, putative, expressed
LOC_Os10g30860Os.17895.1.S1_a_at11/1110+15763382..15767033expressed protein
LOC_Os10g30860Os.17895.2.S1_x_at10/1110+15763382..15767033expressed protein
LOC_Os10g30870Os.18850.1.S1_at11/1110+15767192..15769159expressed protein
LOC_Os10g30870OsAffx.27220.1.S1_at1/1110+15767192..15769159expressed protein
LOC_Os10g30880Os.30124.1.S1_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.30124.1.S1_x_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.56086.1.S1_at1/1110+15776905..15777987expressed protein
LOC_Os10g30890Os.14361.1.S1_at10/1110+15780621..15782714expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9393.1.S1_a_at--1089--4771Chr10:15756443..15756467 (25 bp)
GCTCCAGCTGCCGAGTGGGATAACT
LOC_Os10g30850
Os.9393.1.S1_a_at--625--8012Chr07:5190747..5190767 (21 bp)
GGAGGCTGTGCCTTCAGAAGTTCAG
NONE
Os.9393.1.S1_a_at--706--9491Chr10:15756315..15756339 (25 bp)
TCTGCCTCGAGGTGAATGCCAAGAT
LOC_Os10g30850
Os.9393.1.S1_a_at--1123--31Chr10:15756292..15756316 (25 bp)
ATTGTGCTGCCCGATTGCGCGCACT
LOC_Os10g30850
Os.9393.1.S1_a_at--525--5111Chr10:15756272..15756296 (25 bp)
GCACTCGCTGTGCATGAGATGCTTC
LOC_Os10g30850
Os.9393.1.S1_a_at--211--6331NONE
GATGCTTCGAGGATTGGAACACCAA
NONE
Os.9393.1.S1_a_at--1090--2091Chr10:15755433..15755457 (25 bp)
ACACCAAATCAAAGTCGTGCCCCTT
LOC_Os10g30850
Os.9393.1.S1_a_at--259--4531Chr10:15755406..15755430 (25 bp)
GCCGCGCCTGCCTCAAGAAGGTGAA
LOC_Os10g30850
Os.9393.1.S1_a_at--110--9011Chr10:15755385..15755409 (25 bp)
TGAATCCGAGCAGCCTGTGGTTGTA
LOC_Os10g30850
Os.9393.1.S1_a_at--603--1791Chr10:15755359..15755383 (25 bp)
ACCGACGACCGCGATGTTGTGGATA
LOC_Os10g30850
Os.9393.1.S1_a_at--642--10091Chr10:15755309..15755333 (25 bp)
TAGGCGCCTGTTCATGTTCATAAGT
LOC_Os10g30850
Target Sequence 
GCTCCAGCTGCCGAGTGGGATAACTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGG
AGGAGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTG
CCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGC
CTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTA
GGGAGAACATTAGGCGCCTGTTCATGTTCATAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9393.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis