Browse Element(s) Details


Os.17895.1.S1_a_at

Description gb:AK059279.1
DB_XREF= gi:32969297
TID=Os.17895.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA-binding protein (OSJNBa0094K20.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C10, full insert sequence.
FL= gb:AK073158.1 gb:AK059279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3086011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30850Os.9393.1.S1_a_at10/1110+15755079..15757298RNA-binding protein, putative, expressed
LOC_Os10g30860Os.17895.1.S1_a_at11/1110+15763382..15767033expressed protein
LOC_Os10g30860Os.17895.2.S1_x_at10/1110+15763382..15767033expressed protein
LOC_Os10g30870Os.18850.1.S1_at11/1110+15767192..15769159expressed protein
LOC_Os10g30870OsAffx.27220.1.S1_at1/1110+15767192..15769159expressed protein
LOC_Os10g30880Os.30124.1.S1_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.30124.1.S1_x_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.56086.1.S1_at1/1110+15776905..15777987expressed protein
LOC_Os10g30890Os.14361.1.S1_at10/1110+15780621..15782714expressed protein
LOC_Os10g30900OsAffx.6826.1.S1_at11/1110+15785551..15785936hypothetical protein
LOC_Os10g30910Os.6001.1.S1_at11/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30910Os.6001.2.S1_at1/1110+15791881..15801528transmembrane protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17895.1.S1_a_at--138--5691Chr10:15766761..15766785 (25 bp)
GACATTGAGAGTGCAGAGTTTGTAC
LOC_Os10g30860
Os.17895.1.S1_a_at--877--6111Chr10:15766769..15766793 (25 bp)
GAGTGCAGAGTTTGTACAGCTCTTC
LOC_Os10g30860
Os.17895.1.S1_a_at--178--5051Chr10:15766773..15766797 (25 bp)
GCAGAGTTTGTACAGCTCTTCACCA
LOC_Os10g30860
Os.17895.1.S1_a_at--938--1331Chr10:15766775..15766799 (25 bp)
AGAGTTTGTACAGCTCTTCACCAAG
LOC_Os10g30860
Os.17895.1.S1_a_at--858--6851Chr10:15766799..15766943 (25 bp)
GTTTGCACAGAATTGCGCACTTGTT
LOC_Os10g30860
Os.17895.1.S1_a_at--277--10751Chr10:15766801..15766945 (25 bp)
TTGCACAGAATTGCGCACTTGTTGG
LOC_Os10g30860
Os.17895.1.S1_a_at--118--10691Chr10:15766963..15766987 (25 bp)
TTGCCATGAAGAACTCCATCCCTAA
LOC_Os10g30860
Os.17895.1.S1_a_at--11--4411Chr10:15766965..15766989 (25 bp)
GCCATGAAGAACTCCATCCCTAAGA
LOC_Os10g30860
Os.17895.1.S1_a_at--854--1431Chr10:15766972..15766996 (25 bp)
AGAACTCCATCCCTAAGAGGCAGCC
LOC_Os10g30860
Os.17895.1.S1_a_at--420--331Chr10:15766980..15767004 (25 bp)
ATCCCTAAGAGGCAGCCCAACAGGA
LOC_Os10g30860
Os.17895.1.S1_a_at--414--9791Chr10:15766985..15767009 (25 bp)
TAAGAGGCAGCCCAACAGGAAGAAG
LOC_Os10g30860
Target Sequence 
GACATTGAGAGTGCAGAGTTTGTACAGCTCTTCACCAAGTTTGCACAGAATTGCGCACTTGTTGGGGCGCTCCTCTTCTT
CCTTGCCATGAAGAACTCCATCCCTAAGAGGCAGCCCAACAGGAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17895.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis