Browse Element(s) Details


Os.17895.2.S1_x_at

Description gb:NM_196732.1
DB_XREF= gi:37534823
TID=Os.17895.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17895 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative RNA-binding protein (OSJNBa0094K20.7), mRNA.
PROD=putative RNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3086010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30850Os.9393.1.S1_a_at10/1110+15755079..15757298RNA-binding protein, putative, expressed
LOC_Os10g30860Os.17895.1.S1_a_at11/1110+15763382..15767033expressed protein
LOC_Os10g30860Os.17895.2.S1_x_at10/1110+15763382..15767033expressed protein
LOC_Os10g30870Os.18850.1.S1_at11/1110+15767192..15769159expressed protein
LOC_Os10g30870OsAffx.27220.1.S1_at1/1110+15767192..15769159expressed protein
LOC_Os10g30880Os.30124.1.S1_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.30124.1.S1_x_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.56086.1.S1_at1/1110+15776905..15777987expressed protein
LOC_Os10g30890Os.14361.1.S1_at10/1110+15780621..15782714expressed protein
LOC_Os10g30900OsAffx.6826.1.S1_at11/1110+15785551..15785936hypothetical protein
LOC_Os10g30910Os.6001.1.S1_at11/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30910Os.6001.2.S1_at1/1110+15791881..15801528transmembrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17895.2.S1_x_at--420--8471NONE
TGGATCCGGTGGGTTTAGTGAATTT
NONE
Os.17895.2.S1_x_at--191--9491Chr10:15765239..15765263 (25 bp)
TCTCCAGCCGAAGTTCAACACTATT
LOC_Os10g30860
Os.17895.2.S1_x_at--141--10731Chr10:15765265..15765289 (25 bp)
TTGCAAATATTTCTACCCGTACTGG
LOC_Os10g30860
Os.17895.2.S1_x_at--917--4231Chr10:15765281..15765305 (25 bp)
CCGTACTGGATTAGTGGTGCCTCAT
LOC_Os10g30860
Os.17895.2.S1_x_at--382--10271Chr10:15765460..15765484 (25 bp)
TTTGAAGGGTCTTGGAGGTCTCCTC
LOC_Os10g30860
Os.17895.2.S1_x_at--684--3651Chr10:15765484..15765508 (25 bp)
CTTTATCCTCAGCAGTTCATTGGGT
LOC_Os10g30860
Os.17895.2.S1_x_at--370--3611Chr10:15765501..15765559 (25 bp)
CATTGGGTGCTTATCTCTTGTTGTT
LOC_Os10g30860
Os.17895.2.S1_x_at--80--9591Chr10:15766709..15766729 (21 bp)
TCTTGTTGTTTCACCTTGCTTTTAT
LOC_Os10g30860
Os.17895.2.S1_x_at--805--6071Chr10:15766776..15766800 (25 bp)
GAGTTTGTACAGCTCTTCACCAAGT
LOC_Os10g30860
Os.17895.2.S1_x_at--857--6851Chr10:15766799..15766943 (25 bp)
GTTTGCACAGAATTGCGCACTTGTT
LOC_Os10g30860
Os.17895.2.S1_x_at--119--10691Chr10:15766963..15766987 (25 bp)
TTGCCATGAAGAACTCCATCCCTAA
LOC_Os10g30860
Target Sequence 
TGGATCCGGTGGGTTTAGTGAATTTGGAGTTGATGGTGGGCCGGCCGCAAAAGCTCTCCAGCCGAAGTTCAACACTATTG
TTGCAAATATTTCTACCCGTACTGGATTAGTGGTGCCTCATATTGAATTAAAGCATATTGTTGCTGCAATGATTTCTTTG
AAGGGTCTTGGAGGTCTCCTCTTTATCCTCAGCAGTTCATTGGGTGCTTATCTCTTGTTGTTTCACCTTGCTTTTATTAC
ACCTGTTGTCCACGACTTCTACAACTATGACATTGAGAGTGCAGAGTTTGTACAGCTCTTCACCAAGTTTGCACAGAATT
GCGCACTTGTTGGGGCGCTCCTCTTCTTCCTTGCCATGAAGAACTCCATCCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17895.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis