Browse Element(s) Details


OsAffx.693.2.S1_at

Description tigr:9629.m03603
TID=OsAffx.693.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3799011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37950Os.6768.1.S1_at9/111+21588744..21589239expressed protein
LOC_Os01g37960Os.11353.1.S1_at11/111+21592497..21597668IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g37970OsAffx.2182.1.S1_at11/111+21600076..21600698hypothetical protein
LOC_Os01g37980Os.15638.1.S1_at10/111+21602465..21605661Vesicle transport v-SNARE 13, putative, expressed
LOC_Os01g37990OsAffx.693.2.S1_at11/111+21609490..21611695hypothetical protein
LOC_Os01g37990Os.15638.1.S1_at1/111+21609490..21611695hypothetical protein
LOC_Os01g38000OsAffx.8974.2.A1_at11/111+21612929..21613468hypothetical protein
LOC_Os01g38010NANA1+21620195..21621544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38020Os.47983.1.A1_at1/111+21622623..21623379retrotransposon protein, putative, unclassified
LOC_Os01g38030OsAffx.8972.1.S1_s_at11/111+21633234..21635122hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0006896biological_processGolgi to vacuole transport
GO:0006944biological_processmembrane fusion
GO:0009630biological_processgravitropism
GO:0046907biological_processintracellular transport
GO:0005770cellular_componentlate endosome
GO:0005802cellular_componentGolgi trans face
GO:0005886cellular_componentplasma membrane
GO:0030140cellular_componenttrans-Golgi network transport vesicle
GO:0000149molecular_functionSNARE binding
GO:0004872molecular_functionreceptor activity
GO:0005483molecular_functionsoluble NSF attachment protein activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.693.2.S1_at--859--951Chr01:21609575..21609599 (25 bp)
AGGACCTACATCAACAGCGCGGACG
LOC_Os01g37990
OsAffx.693.2.S1_at--70--4691Chr01:21609593..21609617 (25 bp)
GCGGACGTCTGATACATGCTCATGA
LOC_Os01g37990
OsAffx.693.2.S1_at--1022--3511Chr01:21610648..21610669 (22 bp)
CATGCATGCCCGATTTGGGTTGGGA
LOC_Os01g37990
OsAffx.693.2.S1_at--788--1272Chr01:21610690..21610714 (25 bp)
AGATCATGGCTGTCAATTTTTGGCA
LOC_Os01g37990
OsAffx.693.2.S1_at--366--8991Chr01:21610836..21610856 (21 bp)
TGAAGCCATCTGATTGGCGCCTCGT
LOC_Os01g37990
OsAffx.693.2.S1_at--1087--9671Chr01:21610859..21610883 (25 bp)
TCACTGCCGTACATGTACTGGACGA
LOC_Os01g37990
OsAffx.693.2.S1_at--1155--9931Chr01:21610920..21610944 (25 bp)
TACCGGCCACGTATGGCGGTGTAGA
LOC_Os01g37990
OsAffx.693.2.S1_at--176--5771Chr01:21610957..21610981 (25 bp)
GACGAAGAACGGGACCTGGACACCT
LOC_Os01g37990
OsAffx.693.2.S1_at--230--8531Chr01:21610973..21610997 (25 bp)
TGGACACCTGGTTCTCCATCAGGAG
LOC_Os01g37990
OsAffx.693.2.S1_at--911--9211Chr01:21610987..21611011 (25 bp)
TCCATCAGGAGCAGGTCGGTCGAGA
LOC_Os01g37990
OsAffx.693.2.S1_at--983--7211Chr01:21611005..21611029 (25 bp)
GTCGAGAAGATGACGTGGCCCCAGT
LOC_Os01g37990
Target Sequence 
AGGACCTACATCAACAGCGCGGACGTCTGATACATGCTCATGATATATTGCATAACGTGGATGATAACATCGGAAAGAGC
AGAAGGATCATTGGGGCCATGCATGCCCGATTTGGGTTGGGAATAATTGGTATGTCACTTGAAGATCATGGCTGTCAATT
TTTGGCAGGAAACATGGTGAAGCCATCTGATTGGCGCCTCGTCCTCACTGCCGTACATGTACTGGACGAGAAGGTTCAGG
AGGGGCTCTCTGTCGCCCCGCACAGTACCGGCCACGTATGGCGGTGTAGAGAGCCTCTCGAGGACGAAGAACGGGACCTG
GACACCTGGTTCTCCATCAGGAGCAGGTCGGTCGAGAAGATGACGTGGCCCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.693.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis