Browse Element(s) Details


OsAffx.7031.1.S1_at

Description tigr:9639.m00656
TID=OsAffx.7031.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0719011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07160OsAffx.18718.1.S1_at11/1111+3561605..3564742Leucine Rich Repeat family protein
LOC_Os11g07170OsAffx.7030.1.S1_x_at11/1111+3576994..3580062Leucine Rich Repeat family protein, expressed
LOC_Os11g07170OsAffx.7030.1.S1_at11/1111+3576994..3580062Leucine Rich Repeat family protein, expressed
LOC_Os11g07180OsAffx.30856.1.S1_at11/1111+3585204..3588351Leucine Rich Repeat family protein
LOC_Os11g07190OsAffx.7031.1.S1_at11/1111+3589704..3590827hypothetical protein
LOC_Os11g07200OsAffx.29532.1.S1_x_at3/1111+3609848..3610366retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g07210Os.27053.2.S1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7031.1.S1_at--179--731Chr11:3589906..3589930 (25 bp)
ATGTTGCCGGCCATCGAGACGACGT
LOC_Os11g07190
OsAffx.7031.1.S1_at--265--9411Chr11:3589948..3589972 (25 bp)
TCGTCAGTGATGTCAGCTTCGCCGA
LOC_Os11g07190
OsAffx.7031.1.S1_at--1130--9291Chr11:3589992..3590016 (25 bp)
TCCGCCGAATTGATACCCATCGAGG
LOC_Os11g07190
OsAffx.7031.1.S1_at--266--2571Chr11:3590028..3590052 (25 bp)
AACTGTGCTGGGATTGGATTACTGC
LOC_Os11g07190
OsAffx.7031.1.S1_at--932--7931Chr11:3590043..3590177 (25 bp)
GGATTACTGCTGAGTCGAGCCGTGC
LOC_Os11g07190
OsAffx.7031.1.S1_at--1034--811Chr11:3590193..3590217 (25 bp)
ATGGTTTCAGCGCTCCAGCCAGGAA
LOC_Os11g07190
OsAffx.7031.1.S1_at--1158--7751Chr11:3590385..3590409 (25 bp)
GGTGACATGTCAACCTACGGAGATG
LOC_Os11g07190
OsAffx.7031.1.S1_at--710--3132Chr11:3590633..3590657 (25 bp)
AATTATATCGCTACCCTAATCGCTG
LOC_Os11g07190
OsAffx.7031.1.S1_at--430--4751Chr11:3590654..3590678 (25 bp)
GCTGATCTATCTAGGCGGCTGGCTG
LOC_Os11g07190
OsAffx.7031.1.S1_at--1161--7533Chr11:3590681..3590705 (25 bp)
GGGCCAGCTTTAGGGCTCTTTGGTA
LOC_Os11g07190
OsAffx.7031.1.S1_at--358--9531Chr11:3590697..3590721 (25 bp)
TCTTTGGTAAGCTCCTCGGTGACAG
LOC_Os11g07190
Target Sequence 
ATGTTGCCGGCCATCGAGACGACGTCCACCTGGTCCTCTTCCTCGTCAGTGATGTCAGCTTCGCCGACATGTGGCTGACC
TCCACCTCCGCCGAATTGATACCCATCGAGGAAACATATATCAACTGTGCTGGGATTGGATTACTGCTGAGTCGAGCCGT
GCGGCGATCGGCGGCGGATGGTTTCAGCGCTCCAGCCAGGAACGGACCTCCCGGAGGCGATGAGCAGCGCTCCACGCCCT
CCGGATCAGGGTATGCAGTAGGTGGTGACATGTCAACCTACGGAGATGTTTATAGCTTTGGAATAATTCTCTTTGAAATA
TTTTTACGAAAGAGACCAACAGATGATATGTTCAAGGATGCTGTGAGCAATGTTTACATATTTATACAAGGATGTACAAG
GGGAAATTATATCGCTACCCTAATCGCTGATCTATCTAGGCGGCTGGCTGGTGGGCCAGCTTTAGGGCTCTTTGGTAAGC
TCCTCGGTGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis