Browse Element(s) Details


OsAffx.7037.1.S1_at

Description tigr:9639.m00692
TID=OsAffx.7037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0754011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07490Os.21809.1.S1_at9/1111+3791883..3797010RNA recognition motif family protein, expressed
LOC_Os11g07500Os.14143.1.S1_at11/1111+3797426..3804489DEAD/DEAH box helicase family protein, expressed
LOC_Os11g07510OsAffx.7036.1.S1_at11/1111+3804768..3808515Plant protein family protein
LOC_Os11g07520NANA11+3809206..3811755retrotransposon protein, putative, unclassified
LOC_Os11g07530OsAffx.30864.1.S1_at10/1111+3813721..3815661hypothetical protein
LOC_Os11g07540OsAffx.7037.1.S1_at11/1111+3817727..3819518hypothetical protein
LOC_Os11g07550OsAffx.30864.2.S1_at10/1111+3820417..3822034hypothetical protein
LOC_Os11g07560OsAffx.29033.1.S1_at1/1111+3823371..3824145hypothetical protein
LOC_Os11g07570OsAffx.30865.1.S1_at11/1111+3825735..3827323hypothetical protein
LOC_Os11g07580OsAffx.7038.1.S1_s_at11/1111+3829992..3830656expressed protein
LOC_Os11g07590NANA11+3844020..3844562hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7037.1.S1_at--1090--4151Chr11:3818164..3818188 (25 bp)
CGCCGTCGTCTTGGTGAAGGTCACC
LOC_Os11g07540
OsAffx.7037.1.S1_at--1007--4711Chr11:3818322..3818346 (25 bp)
GCTGGACGCTGTTCGTGACGAGCAC
LOC_Os11g07540
OsAffx.7037.1.S1_at--91--8811Chr11:3818331..3818355 (25 bp)
TGTTCGTGACGAGCACGCTGATGCG
LOC_Os11g07540
OsAffx.7037.1.S1_at--78--5651Chr11:3818375..3818399 (25 bp)
GACACCATGTGGATCGTCATGGCGT
LOC_Os11g07540
OsAffx.7037.1.S1_at--113--8091Chr11:3818545..3818565 (21 bp)
GGAGCTCATGCGCATCATAAGCTGT
LOC_Os11g07540
OsAffx.7037.1.S1_at--758--7391Chr11:3819322..3819346 (25 bp)
GTGATTTTACAGGAGCCAACCTCGG
LOC_Os11g07540
OsAffx.7037.1.S1_at--931--10651Chr11:3819361..3819385 (25 bp)
TTCCGGCTTGCTCGTCGGACGAGAA
LOC_Os11g07540
OsAffx.7037.1.S1_at--509--5971Chr11:3819381..3819405 (25 bp)
GAGAAGCTTGCGATTCTTGTTCAGC
LOC_Os11g07540
OsAffx.7037.1.S1_at--620--6571Chr11:3819392..3819416 (25 bp)
GATTCTTGTTCAGCTGAGATCGATG
LOC_Os11g07540
OsAffx.7037.1.S1_at--781--5571Chr11:3819416..3819440 (25 bp)
GAAAGTGCCAGCGTTAGACTCTCTC
LOC_Os11g07540
OsAffx.7037.1.S1_at--523--4631Chr11:3819426..3819450 (25 bp)
GCGTTAGACTCTCTCATCAACACGG
LOC_Os11g07540
Target Sequence 
CGCCGTCGTCTTGGTGAAGGTCACCGTCGCCGCGTCCCTCGTCCTCACGTCATGGGTGGTGGGGAAGGAGGCACCGGCGG
AGGGCGGCGGCGGCGGCATGCCGACGGCGGCGGACGCGCTGTGCTTGGCGGCGTCGGTGTCGGGGCCGTACCTCGCCGGC
TGGACGCTGTTCGTGACGAGCACGCTGATGCGCGGGTCCTTCATCTCCGGCGACACCATGTGGATCGTCATGGCGTGCCT
GGGCGCGTCATGGCTGATCGTCCCGGCCATCGCCGGCGCCGCCCTCCACCTCTTCGTCGCCTTCATCTACGGCCACTGGC
TCTTCGGCATCGCCATGGCCGGCTTCCTCGGCTACACCATCGCCGTCAACGACCACTACCAGGAGCTCATGCGCATCATA
AGCTGTGATTTTACAGGAGCCAACCTCGGACGGCGTCTGACGCTTCCGGCTTGCTCGTCGGACGAGAAGCTTGCGATTCT
TGTTCAGCTGAGATCGATGAAAGTGCCAGCGTTAGACTCTCTCATCAACACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis