Browse Element(s) Details


OsAffx.7062.1.S1_at

Description tigr:9639.m00978
TID=OsAffx.7062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1037011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10310Os.49827.1.S1_at11/1111+5588030..5598545Leucine Rich Repeat family protein, expressed
LOC_Os11g10320OsAffx.7060.1.S1_s_at10/1111+5600720..5602730expressed protein
LOC_Os11g10320Os.7980.1.S1_at3/1111+5600720..5602730expressed protein
LOC_Os11g10330Os.51951.1.S1_at11/1111+5606764..5610537F-box domain containing protein, expressed
LOC_Os11g10340Os.2431.1.S1_at11/1111+5610910..5613865F-box domain containing protein, expressed
LOC_Os11g10350NANA11+5614657..5615475retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10360NANA11+5616833..5618131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10370OsAffx.7062.1.S1_at11/1111+5623357..5624506F-box domain containing protein
LOC_Os11g10384OsAffx.7063.1.S1_at11/1111+5627299..5635856transposon protein, putative, unclassified
LOC_Os11g10400Os.52471.1.S1_at11/1111+5641128..5643884F-box domain containing protein, expressed
LOC_Os11g10410NANA11+5645202..5647405retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10420OsAffx.7064.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.12740.1.S1_x_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S2_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_s_at10/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7062.1.S1_at--122--4931Chr11:5624009..5624033 (25 bp)
GCTTGCTCATCTGAATTTGGTGCAC
LOC_Os11g10370
OsAffx.7062.1.S1_at--173--10251Chr11:5623994..5624018 (25 bp)
TTTGGTGCACAATTTCCTCGATTTC
LOC_Os11g10370
OsAffx.7062.1.S1_at--909--2091Chr11:5623949..5623973 (25 bp)
ACATCTGGAGATTGTCCTCTGCAGC
LOC_Os11g10370
OsAffx.7062.1.S1_at--605--1291Chr11:5623919..5623943 (25 bp)
AGATGCCGAGAGGATCTCTTCCCAA
LOC_Os11g10370
OsAffx.7062.1.S1_at--435--8971Chr11:5623890..5623914 (25 bp)
TGAAACGCCTCAACATCACTGCATG
LOC_Os11g10370
OsAffx.7062.1.S1_at--358--391Chr11:5623876..5623900 (25 bp)
ATCACTGCATGCGATTTCAGCGAAA
LOC_Os11g10370
OsAffx.7062.1.S1_at--574--5591Chr11:5623733..5623879 (25 bp)
GAAATCTTCCGCACTCATATCAGGT
LOC_Os11g10370
OsAffx.7062.1.S1_at--1069--7891Chr11:5623629..5623653 (25 bp)
GGTTCTGCAAGCTTTTTCACAGGCT
LOC_Os11g10370
OsAffx.7062.1.S1_at--576--8471Chr11:5623597..5623621 (25 bp)
TGGCGTTGGTCGCTGACTCACAAAA
LOC_Os11g10370
OsAffx.7062.1.S1_at--998--5351Chr11:5623417..5623441 (25 bp)
GAAGACTTTGTTGCTCAGTGACAGC
LOC_Os11g10370
OsAffx.7062.1.S1_at--979--31Chr11:5623389..5623413 (25 bp)
ATTGTGGCCTTCGACTTGCATGAAA
LOC_Os11g10370
Target Sequence 
GCTTGCTCATCTGAATTTGGTGCACAATTTCCTCGATTTCTCGAGCTGTCCGGTGCTGGAACATCTGGAGATTGTCCTCT
GCAGCTTGTCAGATGCCGAGAGGATCTCTTCCCAATCCCTGAAACGCCTCAACATCACTGCATGCGATTTCAGCGAAATC
TTCCGCACTCATATCAGGTGTTGTCCAGGAGTTAATGATGACCTTGAGGAATGTCCTTATGACGATTGTGACAATTGTCC
CAGTGACAACAATTGCAAGGTTCTGCAAGCTTTTTCACAGGCTAAGAATTTGGCGTTGGTCGCTGACTCACAAAAGTTTA
TTTTCAAAAGGGAATTGATACGGTGCCCTACATTTAGCAAGTTGAAGACTTTGTTGCTCAGTGACAGCTGGATTGTGGCC
TTCGACTTGCATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis