Browse Element(s) Details


OsAffx.7092.1.S1_at

Description tigr:9639.m01183
TID=OsAffx.7092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1237011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12340Os.4192.1.S1_at11/1111+6883826..6891811NB-ARC domain containing protein, expressed
LOC_Os11g12350NANA11+6892425..6894235NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g12360Os.47463.1.S1_x_at2/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12360Os.14491.2.S1_x_at2/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12360OsAffx.7093.1.S1_at1/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12370OsAffx.7092.1.S1_at11/1111+6910946..6911387hypothetical protein
LOC_Os11g12380OsAffx.7093.1.S1_at11/1111+6913903..6914426expressed protein
LOC_Os11g12390OsAffx.18814.1.S1_at11/1111+6916189..6916581hypothetical protein
LOC_Os11g12400NANA11+6917876..6918292hypothetical protein
LOC_Os11g12410OsAffx.18815.1.S1_x_at11/1111+6920881..6922610Serpin family protein
LOC_Os11g12410OsAffx.18815.1.S1_at11/1111+6920881..6922610Serpin family protein
LOC_Os11g12420OsAffx.18815.1.S1_x_at11/1111+6935672..6937468Serpin family protein
LOC_Os11g12420OsAffx.18815.1.S1_at11/1111+6935672..6937468Serpin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7092.1.S1_at--721--9171Chr11:6911324..6911348 (25 bp)
TGCCCGCCTGCTTTGGTGCCGAGCT
LOC_Os11g12370
OsAffx.7092.1.S1_at--502--10251Chr11:6911313..6911337 (25 bp)
TTTGGTGCCGAGCTCCTATGCATCG
LOC_Os11g12370
OsAffx.7092.1.S1_at--1019--9171Chr11:6911308..6911332 (25 bp)
TGCCGAGCTCCTATGCATCGGCCAT
LOC_Os11g12370
OsAffx.7092.1.S1_at--899--611Chr11:6911274..6911298 (25 bp)
ATGCGGCGTCGGCTCTTTCTTGGAT
LOC_Os11g12370
OsAffx.7092.1.S1_at--1151--3931Chr11:6911266..6911289 (24 bp)
CGGCTCTTTCTTGGATTTCCGTGGG
LOC_Os11g12370
OsAffx.7092.1.S1_at--720--10651Chr11:6911149..6911273 (25 bp)
TTCCGTGGGGTTCCTCTCGATGTTC
LOC_Os11g12370
OsAffx.7092.1.S1_at--355--731Chr11:6911130..6911154 (25 bp)
ATGTTCGTGGGCTAGGGCTTTCAGT
LOC_Os11g12370
OsAffx.7092.1.S1_at--1085--7471Chr11:6911124..6911148 (25 bp)
GTGGGCTAGGGCTTTCAGTCTTTGT
LOC_Os11g12370
OsAffx.7092.1.S1_at--224--3711Chr11:6911119..6911143 (25 bp)
CTAGGGCTTTCAGTCTTTGTTGCTC
LOC_Os11g12370
OsAffx.7092.1.S1_at--630--5011Chr11:6911087..6911111 (25 bp)
GCAGGCTTGCAGCATGTTTCATGTG
LOC_Os11g12370
OsAffx.7092.1.S1_at--184--4931Chr11:6911083..6911107 (25 bp)
GCTTGCAGCATGTTTCATGTGGCTG
LOC_Os11g12370
Target Sequence 
TGCCCGCCTGCTTTGGTGCCGAGCTCCTATGCATCGGCCATCAAGCTCCCATGCGGCGTCGGCTCTTTCTTGGATTTCCG
TGGGGTTCCTCTCGATGTTCGTGGGCTAGGGCTTTCAGTCTTTGTTGCTCCATTCTTGCAGGCTTGCAGCATGTTTCATG
TGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis