Browse Element(s) Details


OsAffx.7097.1.S1_at

Description tigr:9639.m01201
TID=OsAffx.7097.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1254011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12520NANA11+7001255..7002696Serpin family protein
LOC_Os11g12530Os.49784.1.S1_at11/1111+7006898..7014167Leucine Rich Repeat family protein, expressed
LOC_Os11g12530OsAffx.25030.1.S1_x_at1/1111+7006898..7014167Leucine Rich Repeat family protein, expressed
LOC_Os11g12530Os.53778.1.A1_s_at1/1111+7006898..7014167Leucine Rich Repeat family protein, expressed
LOC_Os11g12540OsAffx.7097.1.S1_at11/1111+7018240..7018789hypothetical protein
LOC_Os11g12550OsAffx.8939.1.S1_x_at4/1111+7041422..7041876hypothetical protein
LOC_Os11g12550OsAffx.8939.1.S1_at2/1111+7041422..7041876hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7097.1.S1_at--68--1891Chr11:7018723..7018747 (25 bp)
ACGATGGACCTTCCTGCTACGAGAG
LOC_Os11g12540
OsAffx.7097.1.S1_at--968--8091Chr11:7018718..7018742 (25 bp)
GGACCTTCCTGCTACGAGAGATCAA
LOC_Os11g12540
OsAffx.7097.1.S1_at--622--3831Chr11:7018710..7018734 (25 bp)
CTGCTACGAGAGATCAAGACGACTA
LOC_Os11g12540
OsAffx.7097.1.S1_at--304--2771Chr11:7018695..7018719 (25 bp)
AAGACGACTATGAAGCATCTATAAG
LOC_Os11g12540
OsAffx.7097.1.S1_at--287--2792Chr03:17476166..17476328 (25 bp)
AAGAGGGACTTTTTATGTGCAGCTA
NONE
OsAffx.7097.1.S1_at--565--7331Chr11:7018383..7018407 (25 bp)
GTGCAGCTAACAATAACAATGTACG
LOC_Os11g12540
OsAffx.7097.1.S1_at--749--8651Chr11:7018364..7018388 (25 bp)
TGTACGTAAGTAAGAGCCTAAGCCT
LOC_Os11g12540
OsAffx.7097.1.S1_at--865--2831Chr11:7018357..7018381 (25 bp)
AAGTAAGAGCCTAAGCCTGCCGTTT
LOC_Os11g12540
OsAffx.7097.1.S1_at--473--9791Chr11:7018346..7018370 (25 bp)
TAAGCCTGCCGTTTCATGTGATTAA
LOC_Os11g12540
OsAffx.7097.1.S1_at--87--10191Chr11:7018305..7018329 (25 bp)
TATATTAAGTTTTTCGTCGTGTTCG
LOC_Os11g12540
OsAffx.7097.1.S1_at--867--8391Chr11:7018281..7018305 (25 bp)
GGCGCCTACGCGCTCAGCTTAATTC
LOC_Os11g12540
Target Sequence 
ACGATGGACCTTCCTGCTACGAGAGATCAAGACGACTATGAAGCATCTATAAGAGGGACTTTTTATGTGCAGCTAACAAT
AACAATGTACGTAAGTAAGAGCCTAAGCCTGCCGTTTCATGTGATTAAAGGAAGAGATGAGCTTTATATTAAGTTTTTCG
TCGTGTTCGGCGCCTACGCGCTCAGCTTAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis