Browse Element(s) Details


Os.49784.1.S1_at

Description gb:AK105669.1
DB_XREF= gi:32990878
TID=Os.49784.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A03, full insert sequence.
FL= gb:AK111558.1 gb:AK105669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1253011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12500OsAffx.29755.4.S1_x_at11/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_at10/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_x_at8/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.3.S1_x_at4/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500Os.44324.1.A1_at3/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12510OsAffx.29755.5.S1_x_at11/1111+6986475..6990310hypothetical protein
LOC_Os11g12510OsAffx.29755.1.S1_s_at7/1111+6986475..6990310hypothetical protein
LOC_Os11g12520NANA11+7001255..7002696Serpin family protein
LOC_Os11g12530Os.49784.1.S1_at11/1111+7006898..7014167Leucine Rich Repeat family protein, expressed
LOC_Os11g12530OsAffx.25030.1.S1_x_at1/1111+7006898..7014167Leucine Rich Repeat family protein, expressed
LOC_Os11g12530Os.53778.1.A1_s_at1/1111+7006898..7014167Leucine Rich Repeat family protein, expressed
LOC_Os11g12540OsAffx.7097.1.S1_at11/1111+7018240..7018789hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49784.1.S1_at--100--2931Chr11:7007560..7007584 (25 bp)
AAGGACATCGTGTTCTGGCTGTCAA
LOC_Os11g12530
Os.49784.1.S1_at--882--10531Chr11:7007548..7007572 (25 bp)
TTCTGGCTGTCAACCAAGCTCGCCG
LOC_Os11g12530
Os.49784.1.S1_at--364--7651Chr11:7007439..7007463 (25 bp)
GGGAGGACATGATCAAGGTGCTCAA
LOC_Os11g12530
Os.49784.1.S1_at--271--9171Chr11:7007287..7007311 (25 bp)
TGCGCCAGGAGCAAGAGCTGCTGCT
LOC_Os11g12530
Os.49784.1.S1_at--984--3831Chr11:7007270..7007294 (25 bp)
CTGCTGCTGAATTTTAGAGTAGATT
LOC_Os11g12530
Os.49784.1.S1_at--585--10031Chr11:7007256..7007280 (25 bp)
TAGAGTAGATTCTGCTTTCTCGCCT
LOC_Os11g12530
Os.49784.1.S1_at--970--191Chr11:7007217..7007241 (25 bp)
ATTTCTGCAGCCAACTCTCGCTGAA
LOC_Os11g12530
Os.49784.1.S1_at--119--2551Chr11:7007205..7007229 (25 bp)
AACTCTCGCTGAATTTTAATCTTTG
LOC_Os11g12530
Os.49784.1.S1_at--908--9751Chr11:7007189..7007213 (25 bp)
TAATCTTTGATGTGTACTAGGGATC
LOC_Os11g12530
Os.49784.1.S1_at--1022--7431Chr11:7007178..7007202 (25 bp)
GTGTACTAGGGATCATACTGTAGAT
LOC_Os11g12530
Os.49784.1.S1_at--497--3011Chr11:7007150..7007174 (25 bp)
AATGCATTTGCAGGTATTATGTAAA
LOC_Os11g12530
Target Sequence 
AAGGACATCGTGTTCTGGCTGTCAACCAAGCTCGCCGCGGAGAGCATCGACGACGTGCTGGACCCGCGCGTGGCGGCGCC
GTCGCCGTCGTCGTCGTCGGCGGCGGCGGCTGCCAGGGACAGGGAGGACATGATCAAGGTGCTCAAGGTCGCCGTGCTCT
GCACCGCCAAGCTGCCGGCGGGGCGGCCGACGATGAGGGACGTGGTGAAGATGCTCACCGACGCCGGCGCCGGGCCGTGC
AGCCCCCGCGGCCAGCCGCCGGCGGCGAGGGCTTGCGCCAGGAGCAAGAGCTGCTGCTGAATTTTAGAGTAGATTCTGCT
TTCTCGCCTCTGTCTGCATCTGCATTTCTGCAGCCAACTCTCGCTGAATTTTAATCTTTGATGTGTACTAGGGATCATAC
TGTAGATGATAATGCATTTGCAGGTATTATGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis