Browse Element(s) Details


OsAffx.7150.1.S1_at

Description tigr:9639.m01752
TID=OsAffx.7150.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1890011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18870OsAffx.31049.1.S1_at11/1111+10710790..10713041FLOWERING LOCUS T protein, putative
LOC_Os11g18880Os.27600.1.S1_at11/1111+10716178..10725406UBX domain containing protein, expressed
LOC_Os11g18890OsAffx.31050.1.S1_at11/1111+10725696..10727784hypothetical protein
LOC_Os11g18900OsAffx.7150.1.S1_at11/1111+10729372..10731900hypothetical protein
LOC_Os11g18910NANA11+10732422..10733606retrotransposon, putative, centromere-specific
LOC_Os11g18919OsAffx.18932.1.S1_at11/1111+10736017..10737106hypothetical protein
LOC_Os11g18930OsAffx.18933.1.S1_at11/1111+10742991..10743376expressed protein
LOC_Os11g18940Os.8397.1.S1_at11/1111+10754381..10756057WW domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7150.1.S1_at--151--2511Chr11:10730667..10730691 (25 bp)
AACATTTGCCTTTCAGCGGTTGGAT
LOC_Os11g18900
OsAffx.7150.1.S1_at--966--7991Chr11:10730688..10730712 (25 bp)
GGATGTTCCTCGTGATAGCCTAGAA
LOC_Os11g18900
OsAffx.7150.1.S1_at--779--10531Chr11:10730723..10730747 (25 bp)
TTCTCGATCCAAAATTACCGCCAAT
LOC_Os11g18900
OsAffx.7150.1.S1_at--746--4171Chr11:10730741..10730765 (25 bp)
CGCCAATCGGGTGTCTGATCGGTAA
LOC_Os11g18900
OsAffx.7150.1.S1_at--986--1211Chr11:10730768..10730792 (25 bp)
AGTTCTCAATTGTAGTCGGTGTCTT
LOC_Os11g18900
OsAffx.7150.1.S1_at--525--10831Chr11:10730791..10730811 (21 bp)
TTGGGCAAGGCCATTCTTCAATATT
LOC_Os11g18900
OsAffx.7150.1.S1_at--223--7691Chr11:10731536..10731560 (25 bp)
GGGTTATACTTCGAGCTTATTTTGA
LOC_Os11g18900
OsAffx.7150.1.S1_at--671--10771Chr11:10731668..10731692 (25 bp)
TTGATGCTCAGCCACCTTATGAAGA
LOC_Os11g18900
OsAffx.7150.1.S1_at--178--5351Chr11:10731688..10731712 (25 bp)
GAAGATTTGCCACCAGTTGGTCCTT
LOC_Os11g18900
OsAffx.7150.1.S1_at--1014--1231Chr11:10731702..10731726 (25 bp)
AGTTGGTCCTTTGGGTGTTCAGACA
LOC_Os11g18900
OsAffx.7150.1.S1_at--635--7751Chr11:10731844..10731868 (25 bp)
GGTGTTAGCTCAAACTCTGATCTTA
LOC_Os11g18900
Target Sequence 
AACATTTGCCTTTCAGCGGTTGGATGTTCCTCGTGATAGCCTAGAATTTTCAAAATTTCTCGATCCAAAATTACCGCCAA
TCGGGTGTCTGATCGGTAAGAAGTTCTCAATTGTAGTCGGTGTCTTGGGCAAGGCCATTCTTCAATATTACATCTCTAGA
GTTGTTAGTCTTTTTGGTAGACTAGATTACTGGCAAGAGGGAGATGTAATCCCAGGAAGGGTTATACTTCGAGCTTATTT
TGATGATGTTGATATGGTCCCTAGAAGAATTGCAATAAAGGAAATCAACCAGCATGGTGGTCAAGGTGAATCTTGGGCTT
TTGGTGTTTTTGTGCTAAATAATGAATTTGTTGATGCTCAGCCACCTTATGAAGATTTGCCACCAGTTGGTCCTTTGGGT
GTTCAGACACCTAATAATAATCAGCCAAATGCTCCTTTTGATTATAATGATCATGTTGATGAGGCTAATCATGATAACTT
GGGAAACTGGGAGCAGCATGATAATCAACAGGCAACAGGAAATTCTGGTGTTAGCTCAAACTCTGATCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis