Browse Element(s) Details


OsAffx.7288.1.S1_at

Description tigr:9639.m03051
TID=OsAffx.7288.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3397011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33946NANA11+19331287..19333706hypothetical protein
LOC_Os11g33950OsAffx.31286.1.S1_at10/1111+19335685..19336289hypothetical protein
LOC_Os11g33960OsAffx.2735.1.S1_at9/1111+19338980..19345603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33970OsAffx.7288.1.S1_at11/1111+19357334..19358206expressed protein
LOC_Os11g33980OsAffx.31287.1.S1_at11/1111+19358315..19362454hypothetical protein
LOC_Os11g33980OsAffx.20497.1.S1_at1/1111+19358315..19362454hypothetical protein
LOC_Os11g33990OsAffx.7289.1.S1_at11/1111+19368786..19369638expressed protein
LOC_Os11g34000OsAffx.30422.2.S1_x_at11/1111+19370862..19371146hypothetical protein
LOC_Os11g34000OsAffx.30422.1.S1_x_at1/1111+19370862..19371146hypothetical protein
LOC_Os11g34010OsAffx.19147.1.S1_at11/1111+19372416..19372758hypothetical protein
LOC_Os11g34020OsAffx.19148.1.S1_x_at11/1111+19374030..19374944expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7288.1.S1_at--305--891Chr11:19357565..19357589 (25 bp)
AGGCCTTTCATCTATCGGGTGCCCA
LOC_Os11g33970
OsAffx.7288.1.S1_at--62--7711Chr11:19357581..19357605 (25 bp)
GGGTGCCCAACCACATCAAGAACAT
LOC_Os11g33970
OsAffx.7288.1.S1_at--744--1431Chr11:19357599..19357623 (25 bp)
AGAACATGACGAACCCGGACGCATA
LOC_Os11g33970
OsAffx.7288.1.S1_at--1161--4771Chr11:19357738..19357762 (25 bp)
GCTGCGAGAATTCATGGCTGCCGTC
LOC_Os11g33970
OsAffx.7288.1.S1_at--858--5851Chr11:19357785..19357809 (25 bp)
GAGCCGCTTACGAGGACCTTGATGA
LOC_Os11g33970
OsAffx.7288.1.S1_at--224--8871Chr11:19357875..19357899 (25 bp)
TGATGAGGGCGTTTCAGCTTCAGCG
LOC_Os11g33970
OsAffx.7288.1.S1_at--985--6031Chr11:19357929..19357953 (25 bp)
GAGATTACGAGGCTGACGACCCTGT
LOC_Os11g33970
OsAffx.7288.1.S1_at--327--9551Chr11:19357953..19357977 (25 bp)
TCTTCAGCGAGCACGGGTACCTATA
LOC_Os11g33970
OsAffx.7288.1.S1_at--421--7851Chr11:19357968..19357992 (25 bp)
GGTACCTATACCTGCGCTGCGATAT
LOC_Os11g33970
OsAffx.7288.1.S1_at--380--5611Chr11:19358042..19358066 (25 bp)
GACAAGCTCTGCCATGTTGCATACG
LOC_Os11g33970
OsAffx.7288.1.S1_at--480--6671Chr11:19358057..19358080 (24 bp)
GTTGCATACGCAGACAATCTTCAGT
LOC_Os11g33970
Target Sequence 
AGGCCTTTCATCTATCGGGTGCCCAACCACATCAAGAACATGACGAACCCGGACGCATACCGGCCGCGGTTGGTGTCGCT
GGGGCCCTTCCACCACGGCGAGGCCGAGCTGCAGCCCATGGAGAAGCACAAGCACCGCGCGGTGGCGCACCTGATCGAGC
GTAGCGGGAAGCCGCTGCGAGAATTCATGGCTGCCGTCGAGGAGATCGCCGAGCAGCTGCGAGCCGCTTACGAGGACCTT
GATGACGAGAGGTGGAGCGGAGAGGAGTTCGTGGAGCTGATGCTCACCGACGGCTGCTTCTTGCTGGAGGTGATGAGGGC
GTTTCAGCTTCAGCGGGAAGGGAAGAAGGAGGTAGAAGAAGGGGGAGATTACGAGGCTGACGACCCTGTCTTCAGCGAGC
ACGGGTACCTATACCTGCGCTGCGATATCATCTCCGACGTGCTCCTGATGGAGAACCAGCTTCCCCTGCTCCTCCTCGAC
AAGCTCTGCCATGTTGCATACGCAGACAATCTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis