Browse Element(s) Details


OsAffx.7314.1.S1_at

Description tigr:9639.m03288
TID=OsAffx.7314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to carotenoid isomerase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3644011/11carotenoid isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36400Os.56294.1.S1_at11/1111+20961065..20963169expressed protein
LOC_Os11g36410OsAffx.31324.1.S1_at11/1111+20967756..20970788NB-ARC domain containing protein
LOC_Os11g36420Os.21345.1.S1_at11/1111+20974391..20978324sialyltransferase, putative, expressed
LOC_Os11g36430Os.8445.1.S1_at11/1111+20978869..20983802RING-H2 finger protein RHF2a, putative, expressed
LOC_Os11g36440OsAffx.7314.1.S1_at11/1111+20984661..20988746carotenoid isomerase, putative, expressed
LOC_Os11g36450Os.35279.1.S1_at11/1111+20989245..20991948transcription factor jumonji, putative, expressed
LOC_Os11g36460NANA11+20993247..20994542Structural maintenance of chromosome 5, putative
LOC_Os11g36470Os.50923.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.31325.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.21343.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.50936.1.S1_x_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.10335.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009662biological_processetioplast organization and biogenesis
GO:0016117biological_processcarotenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016491molecular_functionoxidoreductase activity
GO:0046608molecular_functioncarotenoid isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7314.1.S1_at--981--9771Chr11:20987296..20987320 (25 bp)
TAAGTATCCCTACAGTGCTTGACCC
LOC_Os11g36440
OsAffx.7314.1.S1_at--1030--10851Chr11:20987325..20987349 (25 bp)
TTGGCTCCCGAAGGACACCATATAC
LOC_Os11g36440
OsAffx.7314.1.S1_at--388--2411Chr11:20987563..20987587 (25 bp)
AAAAAAGCTGTTCCCTGGTCTTCAG
LOC_Os11g36440
OsAffx.7314.1.S1_at--1095--7251Chr11:20987597..20987789 (25 bp)
GTCCTCAAGGAGGTAGGCTCACCAA
LOC_Os11g36440
OsAffx.7314.1.S1_at--7--7851Chr11:20987822..20987846 (25 bp)
GGTACATATGGACCCATGCCACGGG
LOC_Os11g36440
OsAffx.7314.1.S1_at--44--331Chr11:20987880..20988066 (25 bp)
ATACTACTGGATCATGTGTGCTCAT
LOC_Os11g36440
OsAffx.7314.1.S1_at--1056--7311Chr11:20988059..20988083 (25 bp)
GTGCTCATCGAGTTGCAGCTGATAT
LOC_Os11g36440
OsAffx.7314.1.S1_at--425--2411Chr11:20988389..20988413 (25 bp)
AAACACCTTCTCACACATGTCATGG
LOC_Os11g36440
OsAffx.7314.1.S1_at--1094--2711Chr11:20988451..20988475 (25 bp)
AAGCAGCAGTTTTTGCCTCTTGGGA
LOC_Os11g36440
OsAffx.7314.1.S1_at--202--6431Chr11:20988474..20988498 (25 bp)
GATCTTGCTTCTGCCTGGTATATAC
LOC_Os11g36440
OsAffx.7314.1.S1_at--62--6551Chr11:20988508..20988532 (25 bp)
GATTTTCAGCTGCAGTGATCCCTGA
LOC_Os11g36440
Target Sequence 
TAAGTATCCCTACAGTGCTTGACCCATCCTTGGCTCCCGAAGGACACCATATACTTCATATTTTTACAACTGCAGGGATA
GAGGATTGGGAAGGTCTGTCCAGGAAGGATTATGAGAAGAAAAAGGAGCTTGTGGCGACAGAGATAATAAAGAGGCTTGA
AAAAAAGCTGTTCCCTGGTCTTCAGGATTCAATAGTCCTCAAGGAGGTAGGCTCACCAAAAACACACCGAAGATTTCTTG
CGCGAAATGATGGTACATATGGACCCATGCCACGGGGTAAACCAAAGGGATTGCTAGCAATGCCTTTCAATACTACTGGA
TCATGTGTGCTCATCGAGTTGCAGCTGATATTGAAAAACACCTTCTCACACATGTCATGGTCATTGCACATTTGTTTTGG
TGAGCCATACATGGATCAAGCAGCAGTTTTTGCCTCTTGGGATCTTGCTTCTGCCTGGTATATACAAGAGGTTGGATTTT
CAGCTGCAGTGATCCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis