Browse Element(s) Details


OsAffx.7333.1.S1_at

Description tigr:9639.m03456
TID=OsAffx.7333.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3810011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38060OsAffx.31359.1.S1_x_at11/1111+22074379..22075359phosphoesterase family protein, putative
LOC_Os11g38070Os.52943.1.S1_at11/1111+22076566..22078090expressed protein
LOC_Os11g38080NANA11+22080631..22081224retrotransposon protein, putative, unclassified
LOC_Os11g38090Os.27691.1.S1_x_at1/1111+22085027..22090731retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38100OsAffx.7333.1.S1_at11/1111+22099355..22100803F-box domain containing protein
LOC_Os11g38110NANA11+22101852..22102217retrotransposon protein, putative, unclassified
LOC_Os11g38120Os.55133.1.S1_at10/1111+22103551..22105264F-box domain containing protein, expressed
LOC_Os11g38130Os.53273.1.S1_at11/1111+22109670..22111199F-box domain containing protein, expressed
LOC_Os11g38130Os.54729.1.S1_s_at3/1111+22109670..22111199F-box domain containing protein, expressed
LOC_Os11g38140Os.54729.1.S1_s_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38140Os.54729.1.S1_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38150OsAffx.19227.1.S1_at11/1111+22117879..22122784hypothetical protein
LOC_Os11g38160OsAffx.14584.1.S1_at11/1111+22124289..22125964Sugar transporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7333.1.S1_at--706--8071Chr11:22100214..22100238 (25 bp)
GGAGCACGAGCTTACCATCCAGGTA
LOC_Os11g38100
OsAffx.7333.1.S1_at--1124--571Chr11:22100230..22100254 (25 bp)
ATCCAGGTACCTCGAAGATGTCCAC
LOC_Os11g38100
OsAffx.7333.1.S1_at--1085--3471Chr11:22100326..22100350 (25 bp)
CAGGCAATGGGTCAGTTCCTACGAT
LOC_Os11g38100
OsAffx.7333.1.S1_at--387--6291Chr11:22100360..22100384 (25 bp)
GATGATCAAGACGACTCCTCCAACG
LOC_Os11g38100
OsAffx.7333.1.S1_at--879--7951Chr11:22100398..22100422 (25 bp)
GGATCAAGACGACGACTCCTACGAT
LOC_Os11g38100
OsAffx.7333.1.S1_at--670--5711Chr11:22100411..22100435 (25 bp)
GACTCCTACGATTCGTCATCTGAGG
LOC_Os11g38100
OsAffx.7333.1.S1_at--605--5351Chr11:22100468..22100492 (25 bp)
GAAGATCTCATCACCAGGGACATAC
LOC_Os11g38100
OsAffx.7333.1.S1_at--314--1591Chr11:22100523..22100547 (25 bp)
AGCTCGATGCGATGGACAGTCTAGA
LOC_Os11g38100
OsAffx.7333.1.S1_at--933--10011Chr11:22100544..22100568 (25 bp)
TAGACAATCATGCTCTGTTCCTCGG
LOC_Os11g38100
OsAffx.7333.1.S1_at--660--4551Chr11:22100617..22100641 (25 bp)
GCCCAATCATGCTTACATCACGGAT
LOC_Os11g38100
OsAffx.7333.1.S1_at--230--3971Chr11:22100637..22100661 (25 bp)
CGGATGATTCGCTCGAGTTTGTCAA
LOC_Os11g38100
Target Sequence 
GGAGCACGAGCTTACCATCCAGGTACCTCGAAGATGTCCACCTGCCATGCGCCCAACCTTGCAGATACCTCGTCAACACG
CCGTCGGGCGAGCTCTTGCACGTCTGGAGGTTCAGGCAATGGGTCAGTTCCTACGATTCGTCATCTGATGATCAAGACGA
CTCCTCCAACGATTCGTCATCCGAGGATCAAGACGACGACTCCTACGATTCGTCATCTGAGGATCAAGACGACTCGTCCT
CGAGAGACCTGTATGAAGATCTCATCACCAGGGACATACAGCTCTACAGGACTGACTTCCATGGAAAGAAGCTCGATGCG
ATGGACAGTCTAGACAATCATGCTCTGTTCCTCGGTTACAATACCTCCTTGTGCCTTCCAACGGAGGATTTCCCTGGATT
GAAGCCCAATCATGCTTACATCACGGATGATTCGCTCGAGTTTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis