Browse Element(s) Details


OsAffx.7341.1.S1_at

Description tigr:9639.m03490
TID=OsAffx.7341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3845011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38410NANA11+22245684..22246118hypothetical protein
LOC_Os11g38420Os.20602.2.S1_x_at10/1111+22253727..22255907hAT family dimerisation domain containing protein
LOC_Os11g38430OsAffx.31366.1.S1_at11/1111+22258418..22258844hypothetical protein
LOC_Os11g38440OsAffx.31368.2.S1_at11/1111+22262470..22266357expressed protein
LOC_Os11g38440OsAffx.31368.1.S1_x_at4/1111+22262470..22266357expressed protein
LOC_Os11g38440Os.55420.1.A1_x_at1/1111+22262470..22266357expressed protein
LOC_Os11g38450OsAffx.7341.1.S1_at11/1111+22267275..22270808hypothetical protein
LOC_Os11g38450OsAffx.31372.1.S1_at2/1111+22267275..22270808hypothetical protein
LOC_Os11g38456Os.47463.1.S1_x_at5/1111+22276068..22279789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38456Os.14491.2.S1_x_at4/1111+22276068..22279789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38462NANA11+22282777..22286109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38470OsAffx.31369.1.S1_at8/1111+22293671..22294339hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7341.1.S1_at--289--7592Chr11:22268059..22268083 (25 bp)
GGGCATCGCAGCTCATTGGGTTAGT
LOC_Os11g38450
OsAffx.7341.1.S1_at--897--7431Chr11:22268024..22268048 (25 bp)
GTGTAAAGCCAGAGCCGCTGGAGAT
LOC_Os11g38450
OsAffx.7341.1.S1_at--815--3251Chr11:22267968..22267992 (25 bp)
CAACAGAGACCCTCATTGGCGGAGA
LOC_Os11g38450
OsAffx.7341.1.S1_at--734--6191Chr11:22267937..22267961 (25 bp)
GAGGAACTCAGATCAAAGTGGTCAT
LOC_Os11g38450
OsAffx.7341.1.S1_at--987--4731Chr11:22267765..22267789 (25 bp)
GCTGTAATGGCTGGGTGCTCATCGA
LOC_Os11g38450
OsAffx.7341.1.S1_at--169--7711Chr11:22267753..22267777 (25 bp)
GGGTGCTCATCGACTCAATGGTGAA
LOC_Os11g38450
OsAffx.7341.1.S1_at--253--7711Chr11:22267723..22267747 (25 bp)
GGTGGAGGACGTGCGTCTCCAACAA
LOC_Os11g38450
OsAffx.7341.1.S1_at--83--5831Chr11:22267670..22267694 (25 bp)
GACCGTGCCAAGACAACCATTGATG
LOC_Os11g38450
OsAffx.7341.1.S1_at--823--5551Chr11:22267382..22267406 (25 bp)
GAAACCACACGGATTGACCAAATGC
LOC_Os11g38450
OsAffx.7341.1.S1_at--216--2291Chr11:22267363..22267387 (25 bp)
AAATGCACGGCAGCATACGACTGAA
LOC_Os11g38450
OsAffx.7341.1.S1_at--61--3731Chr11:22267314..22267338 (25 bp)
CTACCGCTGGCACTTCAATCAGAAG
LOC_Os11g38450
Target Sequence 
GGGCATCGCAGCTCATTGGGTTAGTGCAGCAGGAAGTGTAAAGCCAGAGCCGCTGGAGATGGGAGGAGGAAGGCAGGGTG
GGGGCGAGGCGCAACAGAGACCCTCATTGGCGGAGAGAATGGGAGGAACTCAGATCAAAGTGGTCATGGAAGGAAAGGGC
TGTAATGGCTGGGTGCTCATCGACTCAATGGTGAACACATGGTGGAGGACGTGCGTCTCCAACAACCCAAGCCTCCAGTT
CCTCGACATTGTCGACCGTGCCAAGACAACCATTGATGCAAGCAAACAACGGGGAGAAACCACACGGATTGACCAAATGC
ACGGCAGCATACGACTGAAAACAACTTCTGTTTTCCTCGAGAGCTACCGCTGGCACTTCAATCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis