Browse Element(s) Details


OsAffx.7354.1.S1_at

Description tigr:9639.m03604
TID=OsAffx.7354.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Jacalin-like lectin domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3949011/11Jacalin-like lectin domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39440NANA11+22985297..22986700retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39450OsAffx.19253.1.S1_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed
LOC_Os11g39450Os.9426.1.S1_s_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed
LOC_Os11g39460NANA11+22998545..23000528hypothetical protein
LOC_Os11g39470OsAffx.31386.1.S1_at9/1111+23001053..23003591hypothetical protein
LOC_Os11g39470Os.54691.1.S1_x_at1/1111+23001053..23003591hypothetical protein
LOC_Os11g39480OsAffx.31387.1.S1_at11/1111+23005292..23005957Jacalin-like lectin domain containing protein
LOC_Os11g39490OsAffx.7354.1.S1_at11/1111+23007041..23011803Jacalin-like lectin domain containing protein
LOC_Os11g39500OsAffx.31388.1.S1_at11/1111+23012951..23013340hypothetical protein
LOC_Os11g39510NANA11+23021147..23029240retrotransposon protein, putative, unclassified
LOC_Os11g39520OsAffx.19255.1.S1_at10/1111+23033794..23034773hypothetical protein
LOC_Os11g39530OsAffx.7355.1.S1_at10/1111+23035948..23044173Jacalin-like lectin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7354.1.S1_at--786--2091Chr11:23007799..23007823 (25 bp)
ACATGCATGCGATAGGCGTCAACGT
LOC_Os11g39490
OsAffx.7354.1.S1_at--890--5011Chr11:23007523..23007547 (25 bp)
GCAGTGGCACCTCACCATTTAGAAA
LOC_Os11g39490
OsAffx.7354.1.S1_at--783--2671Chr11:23007500..23007524 (25 bp)
AAGCGTGACGATCTGCAGTGCTGTT
LOC_Os11g39490
OsAffx.7354.1.S1_at--173--4751Chr11:23007481..23007505 (25 bp)
GCTGTTGTCATTGATTCACTTGCAT
LOC_Os11g39490
OsAffx.7354.1.S1_at--399--8591Chr11:23007407..23007431 (25 bp)
TGGTCCTGGTGGGATGAGCCATACA
LOC_Os11g39490
OsAffx.7354.1.S1_at--941--1191Chr11:23007260..23007283 (24 bp)
AGTTAAGTTCGGCTCTTCTGAGTTC
LOC_Os11g39490
OsAffx.7354.1.S1_at--658--9571Chr11:23007247..23007271 (25 bp)
TCTTCTGAGTTCTTGGTGCGAGTTT
LOC_Os11g39490
OsAffx.7354.1.S1_at--628--2211Chr11:23007217..23007241 (25 bp)
ACAATAGGTCCATTTCGTGCATCAC
LOC_Os11g39490
OsAffx.7354.1.S1_at--746--2231Chr11:23007161..23007185 (25 bp)
AAATGTTCGTAGCTATGGACCTTTT
LOC_Os11g39490
OsAffx.7354.1.S1_at--859--6111Chr11:23007126..23007150 (25 bp)
GAGGGACTCCATTTGACGTTCCAAT
LOC_Os11g39490
OsAffx.7354.1.S1_at--491--4911Chr11:23007078..23007102 (25 bp)
GCTTCTTTGGTCACGCAAGGTCATA
LOC_Os11g39490
Target Sequence 
ACATGCATGCGATAGGCGTCAACGTGGATGCAGGAGTGGACGAGAACGATCGGCTTGCAAAGATTGGGCCATGGGGCGGA
AGCGAAGGAATTGTTAAGGACATCAATGTGGCAGTGGCACCTCACCATTTAGAAAGCGTGACGATCTGCAGTGCTGTTGT
CATTGATTCACTTGCATTTTCGTACAGTAAATCCAACGGGCAAAAATACGATATAGGCCCATGGGGTGGTCCTGGTGGGA
TGAGCCATACAGTTAAGTTCGGCTCTTCTGAGTTCTTGGTGCGAGTTTTTGGAACAATAGGTCCATTTCGTGCATCACGA
TGTGTTGTAACATCTGTTACATTTGTTACAAATGTTCGTAGCTATGGACCTTTTGGTCAAGGAGGAGGGACTCCATTTGA
CGTTCCAATGCAGAGCAACGGAAAAATTGTTGGCTTCTTTGGTCACGCAAGGTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis