Browse Element(s) Details


OsAffx.7359.1.S1_at

Description tigr:9639.m03623
TID=OsAffx.7359.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3969011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39650Os.20727.1.S1_at11/1111+23113750..23117939St12p protein, putative, expressed
LOC_Os11g39660OsAffx.19258.2.S1_x_at11/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660OsAffx.24518.2.S1_x_at2/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660Os.57200.1.S1_x_at1/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39670Os.54818.1.S1_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39670Os.53877.1.S1_x_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39680OsAffx.31391.1.S1_at11/1111+23134150..23134689hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_at11/1111+23138929..23139138hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_x_at11/1111+23138929..23139138hypothetical protein
LOC_Os11g39699OsAffx.30582.1.S1_s_at2/1111+23146586..23147544NA
LOC_Os11g39710NANA11+23150100..23151986retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39720NANA11+23157166..23159845retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7359.1.S1_at--100--9391Chr11:23139074..23139098 (25 bp)
TCGAGGAGAGGAGGTTCTGGGCATG
LOC_Os11g39690
OsAffx.7359.1.S1_at--808--8271Chr11:23139055..23139079 (25 bp)
GGCATGGGAGAATCACCGTGGATTT
LOC_Os11g39690
OsAffx.7359.1.S1_at--1087--4991Chr11:23139054..23139078 (25 bp)
GCATGGGAGAATCACCGTGGATTTC
LOC_Os11g39690
OsAffx.7359.1.S1_at--240--811Chr11:23139052..23139076 (25 bp)
ATGGGAGAATCACCGTGGATTTCTT
LOC_Os11g39690
OsAffx.7359.1.S1_at--180--7651Chr11:23139050..23139074 (25 bp)
GGGAGAATCACCGTGGATTTCTTGT
LOC_Os11g39690
OsAffx.7359.1.S1_at--565--8051Chr11:23139049..23139073 (25 bp)
GGAGAATCACCGTGGATTTCTTGTT
LOC_Os11g39690
OsAffx.7359.1.S1_at--1009--1471Chr11:23139047..23139071 (25 bp)
AGAATCACCGTGGATTTCTTGTTGA
LOC_Os11g39690
OsAffx.7359.1.S1_at--697--10751Chr11:23139020..23139044 (25 bp)
TTGGTGCGAGCGTGGAGTACGAGGA
LOC_Os11g39690
OsAffx.7359.1.S1_at--1072--5731Chr11:23138976..23139000 (25 bp)
GACGGCGACCACCAAGAAATGGATT
LOC_Os11g39690
OsAffx.7359.1.S1_at--998--1931Chr11:23138975..23138999 (25 bp)
ACGGCGACCACCAAGAAATGGATTG
LOC_Os11g39690
OsAffx.7359.1.S1_at--1108--5831Chr11:23138970..23138994 (25 bp)
GACCACCAAGAAATGGATTGGGATA
LOC_Os11g39690
Target Sequence 
TCGAGGAGAGGAGGTTCTGGGCATGGGAGAATCACCGTGGATTTCTTGTTGATGTTGGTGCGAGCGTGGAGTACGAGGAA
GACGACGACTACGACTACGACGGCGACCACCAAGAAATGGATTGGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis