Browse Element(s) Details


OsAffx.7371.1.S1_at

Description tigr:9639.m03785
TID=OsAffx.7371.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to disease resistance protein RPM1 homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4121011/11disease resistance protein RPM1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41180OsAffx.31479.5.S1_x_at8/1111+24184562..24188660hypothetical protein
LOC_Os11g41190OsAffx.31479.1.S1_x_at11/1111+24190392..24196478AT hook motif-containing protein, putative
LOC_Os11g41190OsAffx.31479.4.S1_x_at8/1111+24190392..24196478AT hook motif-containing protein, putative
LOC_Os11g41200OsAffx.31422.1.S1_at10/1111+24196627..24197944hypothetical protein
LOC_Os11g41210Os.52367.1.S1_at11/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41210OsAffx.7371.1.S1_at11/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41210OsAffx.7039.1.S1_at1/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41230OsAffx.31423.1.S1_at11/1111+24223130..24223696MATH domain containing protein
LOC_Os11g41240OsAffx.31423.1.S1_at11/1111+24225954..24226508MATH domain containing protein
LOC_Os11g41240OsAffx.31423.2.S1_at4/1111+24225954..24226508MATH domain containing protein
LOC_Os11g41250OsAffx.31423.2.S1_at11/1111+24228912..24229355expressed protein
LOC_Os11g41260OsAffx.31424.1.S1_x_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260OsAffx.31424.1.S1_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260Os.24000.1.S1_at4/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41270OsAffx.29307.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41270OsAffx.16528.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41280OsAffx.20387.1.S1_x_at1/1111+24241906..24247931retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7371.1.S1_at--642--10591Chr11:24215158..24215182 (25 bp)
TTCTCCATGGGATTCCTGAGAGGCC
LOC_Os11g41210
OsAffx.7371.1.S1_at--936--4391Chr11:24215193..24215217 (25 bp)
GCCAACCTGACCTATCTGGACATTA
LOC_Os11g41210
OsAffx.7371.1.S1_at--306--1291Chr11:24215248..24215272 (25 bp)
AGATCCTAGGAGACTTACCTGCCTT
LOC_Os11g41210
OsAffx.7371.1.S1_at--1103--10311Chr11:24215275..24215299 (25 bp)
TTTCTCTTTTGTTAGTGTCCGCATT
LOC_Os11g41210
OsAffx.7371.1.S1_at--208--2831Chr11:24215334..24215358 (25 bp)
AAGTTCAGATGTCTAGAGTCTCTAA
LOC_Os11g41210
OsAffx.7371.1.S1_at--456--3751Chr11:24215353..24215377 (25 bp)
CTCTAAACTTGGATTGTTCGGCTAG
LOC_Os11g41210
OsAffx.7371.1.S1_at--921--6711Chr11:24215368..24215392 (25 bp)
GTTCGGCTAGTGATATGATGTTCCA
LOC_Os11g41210
OsAffx.7371.1.S1_at--245--5871Chr11:24215398..24215422 (25 bp)
GAGCCATGCCAACGCTTGTAGACAT
LOC_Os11g41210
OsAffx.7371.1.S1_at--69--9851Chr11:24215429..24215453 (25 bp)
TACAATCAAGGCACATTCCACAAAG
LOC_Os11g41210
OsAffx.7371.1.S1_at--591--3231Chr11:24215494..24215518 (25 bp)
CAACCCTTAAGGCACTCAATGTCTA
LOC_Os11g41210
OsAffx.7371.1.S1_at--21--771Chr11:24215512..24215536 (25 bp)
ATGTCTATATTGACTGCCAAGGCGC
LOC_Os11g41210
Target Sequence 
TTCTCCATGGGATTCCTGAGAGGCCGGCGTCACTGGCCAACCTGACCTATCTGGACATTAGAATCCAACAAGTGACGCAA
GAAACCCTTGAGATCCTAGGAGACTTACCTGCCTTGCTTTCTCTTTTGTTAGTGTCCGCATTTGACAACACAAAAAGGTT
TAGCATATACAGAAATAAGTTCAGATGTCTAGAGTCTCTAAACTTGGATTGTTCGGCTAGTGATATGATGTTCCACGCTG
GAGCCATGCCAACGCTTGTAGACATCAACTTTACAATCAAGGCACATTCCACAAAGTATGCATGTGCCAATCGAAATCTG
GGCATCCACCACCTCTCAACCCTTAAGGCACTCAATGTCTATATTGACTGCCAAGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis