Browse Element(s) Details


OsAffx.7423.1.S1_at

Description tigr:9639.m04282
TID=OsAffx.7423.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4595011/11NAC-domain containing protein 90, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45920Os.25268.1.A1_at10/1111+27272805..27285902retrotransposon protein, putative, unclassified
LOC_Os11g45920Os.51336.1.S1_at1/1111+27272805..27285902retrotransposon protein, putative, unclassified
LOC_Os11g45930Os.52347.1.S1_at11/1111+27286970..27291013NB-ARC domain containing protein, expressed
LOC_Os11g45940OsAffx.31502.1.S1_at11/1111+27292325..27293487hypothetical protein
LOC_Os11g45950OsAffx.7423.1.S1_at11/1111+27297369..27298159NAC-domain containing protein 90, putative, expressed
LOC_Os11g45960OsAffx.10621.1.S1_x_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45960OsAffx.10621.1.S1_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45970OsAffx.19399.1.S1_at11/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.16187.1.S1_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.29322.1.S1_x_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45980OsAffx.31503.1.S1_at7/1111+27313501..27317699NB-ARC domain containing protein
LOC_Os11g45990Os.52208.1.S1_at11/1111+27321847..27328435von Willebrand factor type A domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7423.1.S1_at--575--9891Chr11:27298105..27298129 (25 bp)
TACTTCCGCCACCATGAGAGATGGA
LOC_Os11g45950
OsAffx.7423.1.S1_at--213--8091Chr11:27298070..27298094 (25 bp)
GGACCGGAGCACACCATCAGGGTAT
LOC_Os11g45950
OsAffx.7423.1.S1_at--561--10851Chr11:27298046..27298070 (25 bp)
TTGGAAGACCGCAGGCAAAGCCAGT
LOC_Os11g45950
OsAffx.7423.1.S1_at--148--2371Chr11:27298030..27298054 (25 bp)
AAAGCCAGTTTCGTGTACTCTGCAG
LOC_Os11g45950
OsAffx.7423.1.S1_at--285--9911Chr11:27298015..27298039 (25 bp)
TACTCTGCAGATAGACATCCCGTCG
LOC_Os11g45950
OsAffx.7423.1.S1_at--146--1371Chr11:27297981..27298005 (25 bp)
AGAGCATGTTGTTCTACCGCGGCCC
LOC_Os11g45950
OsAffx.7423.1.S1_at--280--6391Chr11:27297926..27297950 (25 bp)
GATCGACGAGTTTTGGGCACTTGAC
LOC_Os11g45950
OsAffx.7423.1.S1_at--1061--8231Chr11:27297911..27297935 (25 bp)
GGCACTTGACAACGCCGCCAATGGG
LOC_Os11g45950
OsAffx.7423.1.S1_at--337--2351Chr11:27297469..27297873 (25 bp)
AAAACGTTGGTCTCATGCCGAGGTT
LOC_Os11g45950
OsAffx.7423.1.S1_at--503--1551Chr11:27297437..27297461 (25 bp)
AGCTTGTGTCGGCTGTACAGTACAA
LOC_Os11g45950
OsAffx.7423.1.S1_at--112--2451Chr11:27297414..27297438 (25 bp)
AAAATCGAGCTCAGAGCGCCATGTC
LOC_Os11g45950
Target Sequence 
TACTTCCGCCACCATGAGAGATGGATGCACCGGATGGACCGGAGCACACCATCAGGGTATTGGAAGACCGCAGGCAAAGC
CAGTTTCGTGTACTCTGCAGATAGACATCCCGTCGGATTGAAGAAGAGCATGTTGTTCTACCGCGGCCCCGAGCCGTCGG
GGCGCAAAACCAAGTGGAAGATCGACGAGTTTTGGGCACTTGACAACGCCGCCAATGGGTCTGGGGAGCTTTTGGCGCAG
TTGTGCCGCTCACGGCAAAACGTTGGTCTCATGCCGAGGTTCCCTCTCAGCTTGTGTCGGCTGTACAGTACAAAATCGAG
CTCAGAGCGCCATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis